Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12327533	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1455246	1.00[EUR][1000 genomes]
rs16976151	1.00[EUR][1000 genomes]
rs28380540	1.00[EUR][1000 genomes]
rs57090259	1.00[EUR][1000 genomes]
rs58092154	1.00[EUR][1000 genomes]
rs59591408	1.00[EUR][1000 genomes]
rs60194051	1.00[EUR][1000 genomes]
rs7231039	1.00[EUR][1000 genomes]
rs7231185	1.00[EUR][1000 genomes]
rs73401675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094486	1.00[EUR][1000 genomes]
rs8094727	1.00[EUR][1000 genomes]
rs902970	1.00[EUR][1000 genomes]
rs9951023	1.00[EUR][1000 genomes]
rs9952136	1.00[EUR][1000 genomes]
rs9953018	1.00[EUR][1000 genomes]
rs9955801	1.00[EUR][1000 genomes]
rs9959689	1.00[EUR][1000 genomes]
rs9963723	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11212000-11214800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search: