Variant report

Variant	rs28380540
Chromosome Location	chr18:11339125-11339126
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11324796..11327150-chr18:11338669..11340267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263682	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12326594	1.00[EUR][1000 genomes]
rs12327533	1.00[EUR][1000 genomes]
rs1455246	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976151	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16976152	0.97[ASN][1000 genomes]
rs16976153	0.97[ASN][1000 genomes]
rs1874772	1.00[ASN][1000 genomes]
rs2124228	1.00[ASN][1000 genomes]
rs28406157	1.00[ASN][1000 genomes]
rs28496831	1.00[ASN][1000 genomes]
rs28505571	0.97[ASN][1000 genomes]
rs28713321	1.00[ASN][1000 genomes]
rs28762125	1.00[ASN][1000 genomes]
rs36057401	1.00[ASN][1000 genomes]
rs57090259	1.00[EUR][1000 genomes]
rs58092154	1.00[EUR][1000 genomes]
rs59591408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60194051	1.00[EUR][1000 genomes]
rs7230024	1.00[ASN][1000 genomes]
rs7231039	1.00[EUR][1000 genomes]
rs7231185	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73401675	1.00[EUR][1000 genomes]
rs73402984	0.97[ASN][1000 genomes]
rs73402985	0.97[ASN][1000 genomes]
rs8092521	1.00[ASN][1000 genomes]
rs8092523	1.00[ASN][1000 genomes]
rs8094486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095281	1.00[ASN][1000 genomes]
rs902969	1.00[ASN][1000 genomes]
rs902970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9950278	1.00[ASN][1000 genomes]
rs9950284	0.94[ASN][1000 genomes]
rs9951023	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9953018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955801	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9956107	1.00[ASN][1000 genomes]
rs9956498	1.00[ASN][1000 genomes]
rs9959689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9964195	1.00[ASN][1000 genomes]
rs9964199	1.00[ASN][1000 genomes]
rs9964337	1.00[ASN][1000 genomes]
rs9965049	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3336425	chr18:11328001-11375388	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv1056541	chr18:11336695-11558542	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv543651	chr18:11336695-11558542	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11338800-11339200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr18:11338800-11339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:11338800-11339400	Enhancers	NHDF-Ad	bronchial
4	chr18:11339000-11339200	Enhancers	Psoas Muscle	Psoas
5	chr18:11339000-11339200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr18:11339000-11339400	Enhancers	Osteobl	bone

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