Variant report

Variant	rs1874772
Chromosome Location	chr18:11336216-11336217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1455246	1.00[ASN][1000 genomes]
rs16976151	0.97[ASN][1000 genomes]
rs16976152	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16976153	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2124228	1.00[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs28380540	1.00[ASN][1000 genomes]
rs28406157	1.00[ASN][1000 genomes]
rs28496831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28505571	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28713321	1.00[ASN][1000 genomes]
rs28762125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36057401	1.00[ASN][1000 genomes]
rs59591408	1.00[ASN][1000 genomes]
rs7230024	1.00[ASN][1000 genomes]
rs7231185	0.97[ASN][1000 genomes]
rs73402984	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73402985	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8092521	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8092523	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8094486	1.00[ASN][1000 genomes]
rs8094727	1.00[ASN][1000 genomes]
rs8095281	1.00[ASN][1000 genomes]
rs902969	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs902970	1.00[ASN][1000 genomes]
rs9950278	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9950284	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9951023	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs9953018	1.00[ASN][1000 genomes]
rs9955801	1.00[ASN][1000 genomes]
rs9956107	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9956498	1.00[ASN][1000 genomes]
rs9959689	1.00[ASN][1000 genomes]
rs9963723	1.00[ASN][1000 genomes]
rs9964195	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9964199	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9964337	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9965049	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3336425	chr18:11328001-11375388	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1874772	MUC13	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11335800-11337400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr18:11336000-11337400	Enhancers	Psoas Muscle	Psoas
3	chr18:11336200-11336600	Enhancers	Skeletal Muscle Male	skeletal muscle

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