Variant report

Variant	rs9965049
Chromosome Location	chr18:11326784-11326785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35G4-7	chr18:11326269-11326788	NONHSAT057293

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1455246	0.97[ASN][1000 genomes]
rs16976151	1.00[ASN][1000 genomes]
rs16976152	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16976153	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1874772	0.97[ASN][1000 genomes]
rs2124228	1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs28380540	0.97[ASN][1000 genomes]
rs28406157	0.97[ASN][1000 genomes]
rs28496831	0.97[ASN][1000 genomes]
rs28505571	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28713321	0.97[ASN][1000 genomes]
rs28762125	0.97[ASN][1000 genomes]
rs36057401	0.97[ASN][1000 genomes]
rs59591408	0.97[ASN][1000 genomes]
rs7230024	0.97[ASN][1000 genomes]
rs7231185	1.00[ASN][1000 genomes]
rs73402984	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73402985	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8092521	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8092523	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8094486	0.97[ASN][1000 genomes]
rs8094727	0.97[ASN][1000 genomes]
rs8095281	0.97[ASN][1000 genomes]
rs902969	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs902970	0.97[ASN][1000 genomes]
rs9950278	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9950284	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9951023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9953018	0.97[ASN][1000 genomes]
rs9955801	0.97[ASN][1000 genomes]
rs9956107	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9956498	0.97[ASN][1000 genomes]
rs9959689	0.97[ASN][1000 genomes]
rs9963723	0.97[ASN][1000 genomes]
rs9964195	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9964199	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9964337	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11320200-11328200	Enhancers	NHDF-Ad	bronchial
2	chr18:11320400-11327000	Enhancers	NH-A	brain
3	chr18:11321000-11327400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:11321200-11327000	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:11322800-11327800	Enhancers	NHLF	lung
6	chr18:11323000-11328200	Enhancers	HSMM	muscle
7	chr18:11323000-11328200	Enhancers	HSMMtube	muscle
8	chr18:11323200-11328200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:11323400-11328000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:11323600-11327200	Weak transcription	Adipose Nuclei	Adipose
11	chr18:11324600-11328200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr18:11325400-11327400	Weak transcription	Fetal Heart	heart
13	chr18:11325400-11328200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:11325400-11328200	Enhancers	Osteobl	bone
15	chr18:11325400-11333000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:11325800-11327200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:11325800-11328000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:11325800-11328200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:11325800-11328200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr18:11326600-11327400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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