Variant report

Variant	rs57090259
Chromosome Location	chr18:11187707-11187708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12326594	1.00[EUR][1000 genomes]
rs12327533	1.00[EUR][1000 genomes]
rs1455246	1.00[EUR][1000 genomes]
rs16976151	1.00[EUR][1000 genomes]
rs28380540	1.00[EUR][1000 genomes]
rs58092154	1.00[EUR][1000 genomes]
rs59591408	1.00[EUR][1000 genomes]
rs60194051	1.00[EUR][1000 genomes]
rs7231039	1.00[EUR][1000 genomes]
rs7231185	1.00[EUR][1000 genomes]
rs73401675	1.00[EUR][1000 genomes]
rs8094486	1.00[EUR][1000 genomes]
rs8094727	1.00[EUR][1000 genomes]
rs902970	1.00[EUR][1000 genomes]
rs9951023	1.00[EUR][1000 genomes]
rs9952136	1.00[EUR][1000 genomes]
rs9953018	1.00[EUR][1000 genomes]
rs9955801	1.00[EUR][1000 genomes]
rs9959689	1.00[EUR][1000 genomes]
rs9963723	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11178200-11189000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:11180400-11203200	Weak transcription	Aorta	Aorta
3	chr18:11180400-11206800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links