Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:53046792..53051397-chr20:53051595..53055761,6	MCF-7	breast:
2	chr20:52846290..52849195-chr20:53053763..53055378,2	MCF-7	breast:
3	chr20:52824422..52826132-chr20:53053617..53055847,2	MCF-7	breast:
4	chr20:52307525..52309246-chr20:53054454..53056868,2	MCF-7	breast:
5	chr20:53044180..53047180-chr20:53051013..53055422,4	MCF-7	breast:
6	chr20:53039853..53042886-chr20:53054466..53057057,3	MCF-7	breast:
7	chr17:56707942..56710369-chr20:53054080..53055853,2	MCF-7	breast:
8	chr20:53054401..53056125-chr20:53062337..53064075,2	MCF-7	breast:
9	chr20:53052477..53056021-chr20:53080594..53084752,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000101132	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13044898	0.88[CEU][hapmap]
rs1330017	0.88[CEU][hapmap]
rs16999643	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs6014019	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs6014020	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6014032	0.88[CEU][hapmap]
rs6023244	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6023245	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6023247	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6023248	0.98[EUR][1000 genomes]
rs6023251	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs6023253	0.82[AMR][1000 genomes]
rs6023254	0.89[CEU][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6023258	0.80[EUR][1000 genomes]
rs6023291	0.88[CEU][hapmap]
rs6091886	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs6091891	0.88[CEU][hapmap]
rs6097981	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6097986	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6097987	0.82[AMR][1000 genomes]
rs6097988	0.80[EUR][1000 genomes]
rs6097998	0.82[AMR][1000 genomes]
rs6097999	0.82[AMR][1000 genomes]
rs6098009	0.88[CEU][hapmap]
rs7264053	0.82[AMR][1000 genomes]
rs7264143	0.80[EUR][1000 genomes]
rs7271481	0.82[AMR][1000 genomes]
rs73141254	0.80[EUR][1000 genomes]
rs922398	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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