Variant report

Variant	rs6097981
Chromosome Location	chr20:53051775-53051776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12329481	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1321464	0.88[CEU][hapmap]
rs1321465	0.88[CEU][hapmap]
rs1321468	0.88[CEU][hapmap]
rs16999560	0.88[CEU][hapmap]
rs16999643	0.80[CEU][hapmap]
rs17317237	0.88[CEU][hapmap]
rs6014011	0.88[CEU][hapmap]
rs6014019	0.80[CEU][hapmap]
rs6014020	0.80[CEU][hapmap]
rs6023227	0.88[CEU][hapmap]
rs6023244	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6023245	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6023247	0.91[EUR][1000 genomes]
rs6023248	0.93[EUR][1000 genomes]
rs6023251	0.88[CEU][hapmap]
rs6023254	0.80[CEU][hapmap]
rs6091886	0.88[CEU][hapmap]
rs6097986	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53050800-53051800	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links