Variant report

Variant	rs17317237
Chromosome Location	chr20:53023999-53024000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53003557..53006099-chr20:53022424..53024577,2	MCF-7	breast:
2	chr20:53023761..53025464-chr20:53111873..53113529,2	MCF-7	breast:
3	chr20:53019454..53021882-chr20:53023478..53026443,2	MCF-7	breast:
4	chr11:45927481..45930369-chr20:53023684..53026134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234776	Chromatin interaction
ENSG00000255498	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1321464	1.00[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs1321465	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs1321468	1.00[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs1539515	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16999560	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17224616	0.91[EUR][1000 genomes]
rs17224715	0.93[EUR][1000 genomes]
rs2126675	0.81[EUR][1000 genomes]
rs2126677	0.97[EUR][1000 genomes]
rs55865213	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55957910	0.80[AMR][1000 genomes]
rs56339826	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58143732	0.80[AMR][1000 genomes]
rs6014011	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs6023227	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs6023248	0.81[AMR][1000 genomes]
rs60780716	0.80[AMR][1000 genomes]
rs6091858	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6091860	0.97[EUR][1000 genomes]
rs6097931	0.93[EUR][1000 genomes]
rs6097942	0.96[EUR][1000 genomes]
rs6097943	0.96[EUR][1000 genomes]
rs6097944	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs6097950	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73141254	0.80[AMR][1000 genomes]
rs73141258	0.80[AMR][1000 genomes]
rs73143321	0.97[EUR][1000 genomes]
rs73143323	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145242	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145250	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145257	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145263	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145271	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73145273	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73145277	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73147267	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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