Variant report

Variant	rs73145271
Chromosome Location	chr20:53010231-53010232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1539515	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16999560	0.90[EUR][1000 genomes]
rs17224616	0.84[EUR][1000 genomes]
rs17224715	0.86[EUR][1000 genomes]
rs17317237	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2126675	0.93[EUR][1000 genomes]
rs2126677	0.90[EUR][1000 genomes]
rs55865213	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55957910	0.83[AMR][1000 genomes]
rs56339826	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58143732	0.83[AMR][1000 genomes]
rs60780716	0.83[AMR][1000 genomes]
rs6091858	0.88[EUR][1000 genomes]
rs6091860	0.90[EUR][1000 genomes]
rs6097931	0.86[EUR][1000 genomes]
rs6097942	0.88[EUR][1000 genomes]
rs6097943	0.88[EUR][1000 genomes]
rs6097950	0.90[EUR][1000 genomes]
rs73141254	0.83[AMR][1000 genomes]
rs73141258	0.83[AMR][1000 genomes]
rs73143321	0.90[EUR][1000 genomes]
rs73143323	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145242	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145250	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145257	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145263	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145273	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73145277	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73147267	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53002600-53017600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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