Variant report

Variant	rs17224616
Chromosome Location	chr20:52968195-52968196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1539515	0.93[EUR][1000 genomes]
rs16999560	0.94[EUR][1000 genomes]
rs17224715	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17317237	0.91[EUR][1000 genomes]
rs2126677	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55865213	0.94[EUR][1000 genomes]
rs56339826	0.94[EUR][1000 genomes]
rs6091858	0.93[EUR][1000 genomes]
rs6091860	0.94[EUR][1000 genomes]
rs6097931	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6097942	0.93[EUR][1000 genomes]
rs6097943	0.93[EUR][1000 genomes]
rs6097944	0.81[EUR][1000 genomes]
rs6097950	0.94[EUR][1000 genomes]
rs73143321	0.94[EUR][1000 genomes]
rs73143323	0.94[EUR][1000 genomes]
rs73145242	0.94[EUR][1000 genomes]
rs73145250	0.94[EUR][1000 genomes]
rs73145257	0.94[EUR][1000 genomes]
rs73145263	0.94[EUR][1000 genomes]
rs73145271	0.84[EUR][1000 genomes]
rs73145273	0.94[EUR][1000 genomes]
rs73145277	0.94[EUR][1000 genomes]
rs73147267	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52961800-52972200	Weak transcription	Aorta	Aorta
2	chr20:52964400-52972200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr20:52966600-52968400	Enhancers	Hela-S3	cervix
4	chr20:52967400-52971800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr20:52968000-52973400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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