Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52970385..52972617-chr20:52973776..52975623,2	MCF-7	breast:
2	chr20:52970500..52972765-chr20:52999038..53000852,2	MCF-7	breast:
3	chr20:52970953..52973091-chr20:52976759..52978463,2	MCF-7	breast:
4	chr20:52972070..52973740-chr20:53068200..53071039,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1321464	0.82[TSI][hapmap]
rs1321465	0.82[TSI][hapmap]
rs1321468	0.82[TSI][hapmap]
rs1539515	0.94[EUR][1000 genomes]
rs16999560	0.86[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17224616	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17224715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17317237	1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2126675	0.80[EUR][1000 genomes]
rs2126677	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55865213	0.96[EUR][1000 genomes]
rs56339826	0.96[EUR][1000 genomes]
rs6014011	0.82[TSI][hapmap]
rs6023227	0.81[TSI][hapmap]
rs6091858	0.94[EUR][1000 genomes]
rs6091860	0.96[EUR][1000 genomes]
rs6097942	0.94[EUR][1000 genomes]
rs6097943	0.94[EUR][1000 genomes]
rs6097944	0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs6097950	0.96[EUR][1000 genomes]
rs73143321	0.96[EUR][1000 genomes]
rs73143323	0.96[EUR][1000 genomes]
rs73145242	0.96[EUR][1000 genomes]
rs73145250	0.96[EUR][1000 genomes]
rs73145257	0.96[EUR][1000 genomes]
rs73145263	0.96[EUR][1000 genomes]
rs73145271	0.86[EUR][1000 genomes]
rs73145273	0.96[EUR][1000 genomes]
rs73145277	0.96[EUR][1000 genomes]
rs73147267	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52968000-52973400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr20:52971800-52972800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:52972200-52972600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr20:52972200-52972600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:52972200-52972600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:52972200-52972600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:52972200-52972600	Enhancers	NHEK	skin

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