Variant report

Variant	rs6097986
Chromosome Location	chr20:53062261-53062262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53061996..53063880-chr20:53065895..53070016,4	MCF-7	breast:
2	chr17:31149551..31150542-chr20:53061666..53062601,2	MCF-7	breast:
3	chr20:53056007..53058176-chr20:53061924..53063685,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12329481	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13044898	0.88[CEU][hapmap]
rs1330017	0.88[CEU][hapmap]
rs16999643	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6014019	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6014020	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs6014032	0.88[CEU][hapmap]
rs6023244	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6023245	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6023247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6023248	0.98[EUR][1000 genomes]
rs6023251	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6023253	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6023254	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6023258	0.80[EUR][1000 genomes]
rs6023291	0.88[CEU][hapmap]
rs6091886	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs6091891	0.88[CEU][hapmap]
rs6097981	0.91[EUR][1000 genomes]
rs6097987	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6097988	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6097998	0.86[AMR][1000 genomes]
rs6097999	0.86[AMR][1000 genomes]
rs6098009	0.88[CEU][hapmap]
rs7264053	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7264143	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7271481	0.86[AMR][1000 genomes]
rs7271579	0.88[AMR][1000 genomes]
rs73141254	0.80[EUR][1000 genomes]
rs922398	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53062200-53066200	Weak transcription	Right Atrium	heart

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