Variant report

Variant	rs12331631
Chromosome Location	chr4:45479707-45479708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10002872	1.00[EUR][1000 genomes]
rs10009499	1.00[ASN][1000 genomes]
rs10032341	1.00[EUR][1000 genomes]
rs1456513	1.00[ASN][1000 genomes]
rs1456515	1.00[ASN][1000 genomes]
rs1547505	1.00[ASN][1000 genomes]
rs1598655	1.00[ASN][1000 genomes]
rs1672627	1.00[ASN][1000 genomes]
rs1672628	1.00[ASN][1000 genomes]
rs1672630	1.00[ASN][1000 genomes]
rs1672631	1.00[ASN][1000 genomes]
rs1672632	1.00[ASN][1000 genomes]
rs1684750	1.00[ASN][1000 genomes]
rs1684751	1.00[ASN][1000 genomes]
rs1684752	1.00[ASN][1000 genomes]
rs1684790	1.00[ASN][1000 genomes]
rs1684791	1.00[ASN][1000 genomes]
rs16858373	1.00[ASN][1000 genomes]
rs16858512	1.00[EUR][1000 genomes]
rs16858556	1.00[EUR][1000 genomes]
rs2631378	1.00[ASN][1000 genomes]
rs28444112	1.00[EUR][1000 genomes]
rs28558161	1.00[EUR][1000 genomes]
rs28609372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28818833	1.00[EUR][1000 genomes]
rs28839490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41502944	1.00[ASN][1000 genomes]
rs4694805	1.00[EUR][1000 genomes]
rs58204296	1.00[ASN][1000 genomes]
rs73813049	1.00[ASN][1000 genomes]
rs7661353	1.00[ASN][1000 genomes]
rs7676898	1.00[ASN][1000 genomes]
rs7683028	1.00[ASN][1000 genomes]
rs840207	1.00[ASN][1000 genomes]
rs9985650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv461352	chr4:45448030-45587299	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv594108	chr4:45448030-45587299	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv461353	chr4:45470453-46227847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv470030	chr4:45470453-46227847	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv594109	chr4:45470453-46227847	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3422196	chr4:45478420-45480968	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45479400-45479800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:45479400-45480000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links