Variant report

Variant	rs16858512
Chromosome Location	chr4:45444068-45444069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10002872	1.00[EUR][1000 genomes]
rs10032341	1.00[EUR][1000 genomes]
rs12331631	1.00[EUR][1000 genomes]
rs16858556	1.00[EUR][1000 genomes]
rs28444112	1.00[EUR][1000 genomes]
rs28558161	1.00[EUR][1000 genomes]
rs28609372	1.00[EUR][1000 genomes]
rs28818833	1.00[EUR][1000 genomes]
rs28839490	1.00[EUR][1000 genomes]
rs4356942	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4541547	1.00[ASN][1000 genomes]
rs4694805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686726	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9985650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45440200-45444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45441600-45444200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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