Variant report

Variant	rs12333272
Chromosome Location	chr6:107340924-107340925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046417	1.00[AMR][1000 genomes]
rs6568459	1.00[AMR][1000 genomes]
rs6904173	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942371	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73519734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73519759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9486492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9486501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9486509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019898	chr6:107310094-107554445	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1020715	chr6:107313502-107527077	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1025321	chr6:107313502-107555957	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107330800-107349200	Weak transcription	Right Atrium	heart
2	chr6:107335600-107349400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:107339200-107343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:107340000-107341000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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