Variant report

Variant	rs9486501
Chromosome Location	chr6:107354744-107354745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107354639..107357242-chr6:107358716..107361025,2	K562	blood:
2	chr6:107349497..107351079-chr6:107352927..107355147,2	K562	blood:
3	chr6:107349300..107351437-chr6:107351807..107357455,11	K562	blood:

Variant related genes	Relation type
ENSG00000130349	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046417	1.00[AMR][1000 genomes]
rs12333272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568459	1.00[AMR][1000 genomes]
rs6904173	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6937626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73519734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73519759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9486492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9486509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019898	chr6:107310094-107554445	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1020715	chr6:107313502-107527077	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1025321	chr6:107313502-107555957	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107350200-107361200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:107350200-107363400	Weak transcription	Fetal Lung	lung
3	chr6:107350200-107363600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:107350200-107363800	Weak transcription	Aorta	Aorta
5	chr6:107350200-107367000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:107350200-107367000	Weak transcription	Gastric	stomach
7	chr6:107350200-107368200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:107350200-107375000	Weak transcription	Brain Substantia Nigra	brain
9	chr6:107350200-107380600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:107350200-107382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:107350200-107382000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:107350200-107382400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:107350200-107406800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:107350400-107355000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:107350400-107355200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:107350400-107360800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:107350400-107360800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:107350400-107361000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:107350400-107361200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:107350400-107361200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:107350400-107361200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:107350400-107361200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:107350400-107361200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:107350400-107361400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:107350400-107361400	Weak transcription	GM12878-XiMat	blood
26	chr6:107350400-107363600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:107350400-107367000	Weak transcription	Fetal Kidney	kidney
28	chr6:107350400-107375200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:107350400-107390200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:107350800-107360800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:107350800-107361000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:107350800-107363600	Weak transcription	Colonic Mucosa	Colon
33	chr6:107350800-107365400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:107351000-107390800	Weak transcription	Esophagus	oesophagus
35	chr6:107351200-107354800	Strong transcription	Fetal Stomach	stomach
36	chr6:107351200-107360800	Weak transcription	Liver	Liver
37	chr6:107351200-107361000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:107351200-107363600	Weak transcription	Placenta	Placenta
39	chr6:107351200-107369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:107351400-107360400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:107351400-107360800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:107351400-107363600	Weak transcription	HSMMtube	muscle
43	chr6:107351400-107365400	Weak transcription	Fetal Brain Male	brain
44	chr6:107351600-107361200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:107351600-107361200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:107351600-107361200	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:107351600-107365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:107351600-107371200	Weak transcription	Spleen	Spleen
49	chr6:107351800-107354800	Strong transcription	Fetal Intestine Small	intestine
50	chr6:107351800-107361000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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