Variant report

Variant	rs9486509
Chromosome Location	chr6:107378723-107378724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107376793..107380432-chr6:107383762..107386403,3	MCF-7	breast:
2	chr6:107376662..107379454-chr6:107436468..107438410,2	K562	blood:
3	chr6:107378154..107381051-chr6:107383652..107386512,2	K562	blood:
4	chr6:107377037..107380356-chr6:107394391..107397320,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178409	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046417	1.00[AMR][1000 genomes]
rs12333272	1.00[AMR][1000 genomes]
rs6568459	1.00[AMR][1000 genomes]
rs6904173	1.00[AMR][1000 genomes]
rs6937626	1.00[AMR][1000 genomes]
rs6942371	1.00[AMR][1000 genomes]
rs73519734	1.00[AMR][1000 genomes]
rs73519759	1.00[AMR][1000 genomes]
rs9486492	1.00[AMR][1000 genomes]
rs9486501	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019898	chr6:107310094-107554445	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1020715	chr6:107313502-107527077	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1025321	chr6:107313502-107555957	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107350200-107380600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:107350200-107382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:107350200-107382000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:107350200-107382400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:107350200-107406800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:107350400-107390200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:107351000-107390800	Weak transcription	Esophagus	oesophagus
8	chr6:107353800-107382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:107354400-107390400	Weak transcription	Right Ventricle	heart
10	chr6:107354600-107380800	Weak transcription	NHEK	skin
11	chr6:107361800-107382000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:107361800-107382200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:107361800-107382200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:107361800-107382400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:107361800-107382400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:107362000-107382200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:107362000-107386800	Weak transcription	Pancreas	Pancrea
18	chr6:107363800-107382600	Weak transcription	Small Intestine	intestine
19	chr6:107364200-107382200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:107365000-107382400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:107365800-107390400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:107366000-107380600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:107366000-107382200	Weak transcription	Primary B cells from cord blood	blood
24	chr6:107367400-107382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:107367400-107383200	Weak transcription	Colonic Mucosa	Colon
26	chr6:107368000-107380800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:107368000-107382800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:107368000-107390000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:107368600-107385600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:107368600-107387400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:107369400-107380400	Weak transcription	Fetal Heart	heart
32	chr6:107370400-107382200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:107370400-107388600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:107370800-107382800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:107371400-107385800	Weak transcription	Gastric	stomach
36	chr6:107371800-107385600	Weak transcription	HMEC	breast
37	chr6:107372800-107382200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:107372800-107382200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:107372800-107382800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:107372800-107390400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:107373000-107382400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:107373000-107382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:107373000-107383000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:107373000-107387000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:107373000-107391000	Weak transcription	Aorta	Aorta
46	chr6:107373200-107379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:107373200-107380000	Weak transcription	Liver	Liver
48	chr6:107373200-107380200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:107373200-107380800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:107373200-107380800	Weak transcription	Placenta	Placenta

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