Variant report
| Variant | rs12333651 |
|---|---|
| Chromosome Location | chr7:21887045-21887046 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10261104 | 1.00[YRI][hapmap] |
| rs10264970 | 1.00[YRI][hapmap] |
| rs10269223 | 1.00[YRI][hapmap] |
| rs16872969 | 1.00[AMR][1000 genomes] |
| rs17145187 | 1.00[AMR][1000 genomes] |
| rs17145195 | 1.00[AMR][1000 genomes] |
| rs17145222 | 1.00[AMR][1000 genomes] |
| rs17145237 | 1.00[AMR][1000 genomes] |
| rs17145350 | 1.00[AMR][1000 genomes] |
| rs17145375 | 1.00[AMR][1000 genomes] |
| rs17145504 | 1.00[AMR][1000 genomes] |
| rs28636814 | 1.00[AMR][1000 genomes] |
| rs28758852 | 1.00[AMR][1000 genomes] |
| rs6461601 | 1.00[AMR][1000 genomes] |
| rs6960910 | 1.00[AMR][1000 genomes] |
| rs73275610 | 1.00[AMR][1000 genomes] |
| rs73275617 | 1.00[AMR][1000 genomes] |
| rs73275618 | 1.00[AMR][1000 genomes] |
| rs7781349 | 1.00[AMR][1000 genomes] |
| rs7806218 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
