Variant report

Variant	rs12334735
Chromosome Location	chr8:99035348-99035349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99033401..99036324-chr8:99056262..99058997,2	MCF-7	breast:
2	chr8:98878080..98879600-chr8:99034809..99037094,2	MCF-7	breast:
3	chr8:99033477..99035921-chr8:99041950..99044131,2	K562	blood:

Variant related genes	Relation type
ENSG00000132561	Chromatin interaction
ENSG00000156482	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096266	1.00[AMR][1000 genomes]
rs10101541	1.00[AMR][1000 genomes]
rs10106409	1.00[AMR][1000 genomes]
rs10108147	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109972	1.00[AMR][1000 genomes]
rs13439751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1378122	0.88[AFR][1000 genomes]
rs2061052	0.88[AFR][1000 genomes]
rs2255317	0.88[AFR][1000 genomes]
rs2444898	0.85[AFR][1000 genomes]
rs28504529	1.00[AMR][1000 genomes]
rs28638239	0.91[AFR][1000 genomes]
rs28729963	1.00[AMR][1000 genomes]
rs2959642	0.86[AFR][1000 genomes]
rs56060615	1.00[AMR][1000 genomes]
rs59103107	1.00[AMR][1000 genomes]
rs73701228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99008400-99045000	Weak transcription	Colonic Mucosa	Colon
2	chr8:99021200-99053600	Weak transcription	A549	lung
3	chr8:99021400-99043800	Weak transcription	Brain Germinal Matrix	brain
4	chr8:99022400-99055200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:99023800-99041200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:99024000-99044000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:99024000-99054800	Weak transcription	Right Ventricle	heart
8	chr8:99024200-99042800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:99024200-99055000	Weak transcription	Fetal Brain Male	brain
10	chr8:99024200-99056000	Weak transcription	Spleen	Spleen
11	chr8:99025000-99052800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:99025200-99045400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:99025400-99045200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:99026800-99036600	Weak transcription	Lung	lung
15	chr8:99027600-99037400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:99027600-99045400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:99028800-99045400	Weak transcription	Fetal Brain Female	brain
18	chr8:99029000-99053600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:99030000-99045000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr8:99030000-99045200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr8:99030400-99036800	Weak transcription	Osteobl	bone
22	chr8:99030400-99037400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:99030400-99043200	Weak transcription	Esophagus	oesophagus
24	chr8:99030600-99036600	Weak transcription	Primary T cells from cord blood	blood
25	chr8:99030600-99036600	Weak transcription	Fetal Intestine Large	intestine
26	chr8:99030600-99042600	Weak transcription	Placenta	Placenta
27	chr8:99030600-99053400	Weak transcription	Pancreas	Pancrea
28	chr8:99030600-99056800	Weak transcription	Aorta	Aorta
29	chr8:99030800-99036800	Weak transcription	Primary B cells from cord blood	blood
30	chr8:99030800-99046400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:99031000-99035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:99031000-99036400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:99031000-99055400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:99031600-99035600	Weak transcription	Fetal Intestine Small	intestine
35	chr8:99032000-99044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:99032200-99036800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:99032200-99045800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:99032400-99043200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:99032400-99043200	Weak transcription	Dnd41	blood
40	chr8:99032400-99046800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:99033000-99035400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:99033000-99044000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:99033600-99036800	Weak transcription	Liver	Liver
44	chr8:99033600-99039800	Weak transcription	NHLF	lung
45	chr8:99033600-99044000	Weak transcription	Fetal Thymus	thymus
46	chr8:99033600-99045400	Weak transcription	HSMM	muscle
47	chr8:99033800-99035600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr8:99033800-99036000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:99033800-99036600	Weak transcription	Fetal Kidney	kidney
50	chr8:99033800-99036800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links