Variant report

Variant	rs59103107
Chromosome Location	chr8:98983638-98983639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10088117	1.00[AMR][1000 genomes]
rs10096266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108147	1.00[AMR][1000 genomes]
rs10109972	1.00[AMR][1000 genomes]
rs12334735	1.00[AMR][1000 genomes]
rs13439751	1.00[AMR][1000 genomes]
rs28504529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28729963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56060615	1.00[AMR][1000 genomes]
rs73701228	1.00[AMR][1000 genomes]
rs73701230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98968200-98993800	Weak transcription	Esophagus	oesophagus
2	chr8:98970000-98984800	Weak transcription	Fetal Kidney	kidney
3	chr8:98970000-98985200	Weak transcription	Brain Angular Gyrus	brain
4	chr8:98970000-98992200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:98970200-98984800	Weak transcription	Brain Substantia Nigra	brain
6	chr8:98974400-98991200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:98976200-98996200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:98980000-98991600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:98980200-98994800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:98980400-98983800	Weak transcription	Ovary	ovary
11	chr8:98981000-98991200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:98982800-98985200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:98982800-98994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:98983000-98984800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:98983000-98985200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:98983000-98985400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:98983000-98990600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:98983000-98994000	Weak transcription	Left Ventricle	heart
19	chr8:98983200-98984000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:98983200-98984000	Enhancers	NHLF	lung
21	chr8:98983200-98984200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:98983200-98984400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:98983200-98984600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:98983200-98984600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:98983200-98985600	Enhancers	NHDF-Ad	bronchial
26	chr8:98983200-98986200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:98983200-98986200	Enhancers	Osteobl	bone
28	chr8:98983400-98983800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:98983400-98983800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:98983600-98985000	Weak transcription	Brain Anterior Caudate	brain

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