Variant report

Variant	rs28729963
Chromosome Location	chr8:98991003-98991004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98969704..98971901-chr8:98988416..98991010,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10088117	1.00[AMR][1000 genomes]
rs10096266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101541	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106409	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10108147	1.00[AMR][1000 genomes]
rs10109972	1.00[AMR][1000 genomes]
rs12334735	1.00[AMR][1000 genomes]
rs13439751	1.00[AMR][1000 genomes]
rs28504529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56060615	1.00[AMR][1000 genomes]
rs59103107	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701228	1.00[AMR][1000 genomes]
rs73701230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98968200-98993800	Weak transcription	Esophagus	oesophagus
2	chr8:98970000-98992200	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:98974400-98991200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:98976200-98996200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:98980000-98991600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:98980200-98994800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:98981000-98991200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:98982800-98994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:98983000-98994000	Weak transcription	Left Ventricle	heart
10	chr8:98985600-98991200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:98985600-98991200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr8:98985600-98992000	Weak transcription	Fetal Stomach	stomach
13	chr8:98985600-98992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:98985600-98993600	Weak transcription	Brain Angular Gyrus	brain
15	chr8:98985600-98993600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:98985600-98993800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:98985600-98995800	Weak transcription	A549	lung
18	chr8:98986000-98991400	Weak transcription	Adipose Nuclei	Adipose
19	chr8:98986000-98993800	Weak transcription	Brain Substantia Nigra	brain
20	chr8:98986000-98997400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:98987000-98992800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:98987400-98998400	Weak transcription	Pancreas	Pancrea
23	chr8:98988000-99011800	Weak transcription	Aorta	Aorta
24	chr8:98989200-98997200	Weak transcription	Liver	Liver
25	chr8:98990200-98993600	Weak transcription	Ovary	ovary
26	chr8:98990400-98994000	Weak transcription	Fetal Intestine Large	intestine
27	chr8:98990600-98992600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr8:98990600-98997200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:98990800-98993800	Weak transcription	Gastric	stomach
30	chr8:98990800-98997000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:98991000-98993200	Weak transcription	Placenta	Placenta
32	chr8:98991000-98993400	Strong transcription	Fetal Muscle Leg	muscle
33	chr8:98991000-98994000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:98991000-98994200	Enhancers	NHDF-Ad	bronchial
35	chr8:98991000-98997800	Enhancers	Osteobl	bone

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