Variant report

Variant	rs12335044
Chromosome Location	chr8:65146780-65146781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10088800	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10103972	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10106817	0.82[EUR][1000 genomes]
rs10110463	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10504373	0.81[EUR][1000 genomes]
rs13267683	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16930961	0.85[EUR][1000 genomes]
rs17222094	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1962339	0.81[EUR][1000 genomes]
rs2054777	0.85[EUR][1000 genomes]
rs2356343	0.81[EUR][1000 genomes]
rs28423974	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28521674	0.85[EUR][1000 genomes]
rs34379516	0.81[EUR][1000 genomes]
rs34584966	0.98[ASN][1000 genomes]
rs34966923	0.85[EUR][1000 genomes]
rs36058435	0.81[EUR][1000 genomes]
rs4389981	0.81[EUR][1000 genomes]
rs57641942	0.81[EUR][1000 genomes]
rs59182231	0.81[EUR][1000 genomes]
rs6983423	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72652642	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7830531	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65146200-65149800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:65146600-65150000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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