Variant report
| Variant | rs4389981 |
|---|---|
| Chromosome Location | chr8:65091737-65091738 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10088800 | 0.96[EUR][1000 genomes] |
| rs10103972 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10106817 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10504373 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12335044 | 0.81[EUR][1000 genomes] |
| rs16930961 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1962339 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2054777 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2356343 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28423974 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs28521674 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34379516 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34966923 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36058435 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs57641942 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59182231 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6472134 | 0.95[EUR][1000 genomes] |
| rs6983216 | 0.96[EUR][1000 genomes] |
| rs6983423 | 0.92[EUR][1000 genomes] |
| rs72652642 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7830531 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv890970 | chr8:64975466-65125295 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65090600-65095000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr8:65091000-65092200 | Enhancers | Liver | Liver |
