Variant report

Variant	rs6472134
Chromosome Location	chr8:65075054-65075055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088800	0.91[EUR][1000 genomes]
rs10103972	0.89[EUR][1000 genomes]
rs10106817	0.89[EUR][1000 genomes]
rs10504373	0.95[EUR][1000 genomes]
rs13267683	0.81[EUR][1000 genomes]
rs16930961	0.91[EUR][1000 genomes]
rs1962339	0.95[EUR][1000 genomes]
rs2054777	0.91[EUR][1000 genomes]
rs2356343	0.95[EUR][1000 genomes]
rs28423974	0.91[EUR][1000 genomes]
rs28521674	0.91[EUR][1000 genomes]
rs34379516	0.95[EUR][1000 genomes]
rs34966923	0.91[EUR][1000 genomes]
rs36058435	0.95[EUR][1000 genomes]
rs4389981	0.95[EUR][1000 genomes]
rs57641942	0.95[EUR][1000 genomes]
rs59182231	0.95[EUR][1000 genomes]
rs6983216	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983423	0.95[EUR][1000 genomes]
rs72652642	0.89[EUR][1000 genomes]
rs7830531	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv890970	chr8:64975466-65125295	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65073000-65077400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:65073600-65075200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:65073800-65075400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:65074600-65076800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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