Variant report
| Variant | rs6983423 |
|---|---|
| Chromosome Location | chr8:65144104-65144105 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10088800 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10103972 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10106817 | 0.94[EUR][1000 genomes] |
| rs10110463 | 0.80[ASN][1000 genomes] |
| rs10504373 | 0.92[EUR][1000 genomes] |
| rs12335044 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13267683 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs16930961 | 0.96[EUR][1000 genomes] |
| rs17222094 | 0.84[ASN][1000 genomes] |
| rs1962339 | 0.92[EUR][1000 genomes] |
| rs2054777 | 0.96[EUR][1000 genomes] |
| rs2356343 | 0.92[EUR][1000 genomes] |
| rs28423974 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28521674 | 0.96[EUR][1000 genomes] |
| rs34379516 | 0.92[EUR][1000 genomes] |
| rs34584966 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34966923 | 0.96[EUR][1000 genomes] |
| rs36058435 | 0.92[EUR][1000 genomes] |
| rs4389981 | 0.92[EUR][1000 genomes] |
| rs57641942 | 0.92[EUR][1000 genomes] |
| rs59182231 | 0.92[EUR][1000 genomes] |
| rs6472134 | 0.95[EUR][1000 genomes] |
| rs6983216 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72652642 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7830531 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1794842 | chr8:65123560-65145957 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 5 | esv3323966 | chr8:65143923-65146771 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65139200-65146000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
