Variant report

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:28739214-28739587	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr6:28739244-28739560	MCF10A-Er-Src	breast:	n/a	n/a
3	JUN	chr6:28738715-28741405	K562	blood:	n/a	n/a
4	FOS	chr6:28739224-28739585	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr6:28739268-28739857	K562	blood:	n/a	n/a
6	RAD21	chr6:28739290-28739917	HCT-116	colon:	n/a	n/a
7	CTCF	chr6:28739300-28739450	WI-38	lung:	n/a	n/a
8	FOS	chr6:28739212-28739586	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28555206..28557867-chr6:28736797..28739499,2	K562	blood:
2	chr6:28739105..28742072-chr6:28746732..28748309,2	K562	blood:
3	chr6:28739213..28740105-chr6:28777494..28778016,2	K562	blood:
4	chr6:28739291..28741599-chr6:28752490..28754377,2	K562	blood:
5	chr6:28737910..28739642-chr6:28829627..28831368,2	K562	blood:
6	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1233582	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3999045	0.94[ASN][1000 genomes]
rs55659253	1.00[ASN][1000 genomes]
rs55764335	1.00[ASN][1000 genomes]
rs56098960	1.00[ASN][1000 genomes]
rs56165011	1.00[ASN][1000 genomes]
rs57791058	1.00[ASN][1000 genomes]
rs57965355	1.00[ASN][1000 genomes]
rs58258185	1.00[ASN][1000 genomes]
rs60252686	1.00[ASN][1000 genomes]
rs6916286	1.00[ASN][1000 genomes]
rs6923795	1.00[ASN][1000 genomes]
rs7751451	1.00[ASN][1000 genomes]
rs7758798	1.00[ASN][1000 genomes]
rs9257182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9257190	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1233614	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs1233614	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28737200-28739600	Enhancers	K562	blood
3	chr6:28738200-28740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr6:28738400-28739600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr6:28738400-28739600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr6:28739200-28739600	Bivalent Enhancer	HMEC	breast
7	chr6:28739200-28740600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:28739200-28740800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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