Variant report

Variant	rs60252686
Chromosome Location	chr6:28738320-28738321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28689073..28690596-chr6:28736279..28738758,2	K562	blood:
2	chr6:28555206..28557867-chr6:28736797..28739499,2	K562	blood:
3	chr6:28737444..28738535-chr6:28984421..28985606,3	MCF-7	breast:
4	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
5	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
6	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
7	chr6:28737576..28739106-chr6:28862683..28864792,2	K562	blood:
8	chr6:28737910..28739642-chr6:28829627..28831368,2	K562	blood:
9	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:
10	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000225595	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1233614	1.00[ASN][1000 genomes]
rs17280797	0.80[AMR][1000 genomes]
rs17280818	0.80[AMR][1000 genomes]
rs17281186	0.80[AMR][1000 genomes]
rs17346574	0.80[AMR][1000 genomes]
rs2754761	0.95[AFR][1000 genomes]
rs2754762	0.95[AFR][1000 genomes]
rs2754765	0.84[AFR][1000 genomes]
rs2765222	0.84[AFR][1000 genomes]
rs2765223	0.95[AFR][1000 genomes]
rs3999045	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55641015	0.90[AMR][1000 genomes]
rs55659253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55764335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55891766	0.80[AMR][1000 genomes]
rs56003969	0.90[AMR][1000 genomes]
rs56030816	0.95[AFR][1000 genomes]
rs56098960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296645	0.90[AMR][1000 genomes]
rs56374518	0.95[AFR][1000 genomes]
rs56384403	1.00[AMR][1000 genomes]
rs57170714	0.85[AMR][1000 genomes]
rs57693980	0.90[AMR][1000 genomes]
rs57748269	0.90[AMR][1000 genomes]
rs57791058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57965355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58238888	1.00[AMR][1000 genomes]
rs58258185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59233561	0.90[AMR][1000 genomes]
rs59475656	0.90[AMR][1000 genomes]
rs59959723	0.80[AMR][1000 genomes]
rs60311527	1.00[AMR][1000 genomes]
rs61094745	0.80[AMR][1000 genomes]
rs61208746	1.00[AMR][1000 genomes]
rs61703239	0.90[AMR][1000 genomes]
rs6901325	0.85[AMR][1000 genomes]
rs6905871	0.85[AMR][1000 genomes]
rs6906105	0.85[AMR][1000 genomes]
rs6906506	0.85[AMR][1000 genomes]
rs6909960	1.00[AMR][1000 genomes]
rs6916286	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938988	0.95[AFR][1000 genomes]
rs6939948	0.95[AFR][1000 genomes]
rs7738101	0.85[AMR][1000 genomes]
rs7742889	0.90[AMR][1000 genomes]
rs7748319	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751884	1.00[AMR][1000 genomes]
rs7754365	0.85[AMR][1000 genomes]
rs7758798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760656	0.80[AMR][1000 genomes]
rs7765829	0.80[AMR][1000 genomes]
rs7766599	0.80[AMR][1000 genomes]
rs7772111	1.00[AMR][1000 genomes]
rs7772682	0.95[AMR][1000 genomes]
rs9257182	0.98[ASN][1000 genomes]
rs9688414	1.00[AMR][1000 genomes]
rs9767343	0.91[AMR][1000 genomes]
rs9767359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28737000-28738400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:28737200-28739600	Enhancers	K562	blood
5	chr6:28737400-28738400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:28737600-28738400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
7	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr6:28737800-28738400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
10	chr6:28738000-28738400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr6:28738000-28738400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr6:28738200-28738400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr6:28738200-28738400	Enhancers	Hela-S3	cervix
14	chr6:28738200-28739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:28738200-28740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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