Variant report

Variant	rs57170714
Chromosome Location	chr6:28723986-28723987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
2	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
3	chr6:28723357..28725477-chr6:28861527..28864312,2	K562	blood:
4	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
5	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:
6	chr6:28721787..28724398-chr9:131939083..131940744,2	MCF-7	breast:
7	chr6:28706832..28708574-chr6:28723413..28725632,2	K562	blood:
8	chr6:28704284..28707045-chr6:28723983..28725942,2	MCF-7	breast:
9	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:
10	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
11	chr6:28723907..28726622-chr6:28947645..28950512,2	K562	blood:
12	chr6:28695145..28698066-chr6:28723238..28727067,5	K562	blood:
13	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
14	chr6:28652217..28653747-chr6:28722642..28724791,2	K562	blood:
15	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:
16	chr6:28723125..28726078-chr6:28775767..28777359,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188483	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10498733	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1107160	0.85[EUR][1000 genomes]
rs1233582	0.81[ASN][1000 genomes]
rs17280797	0.95[AFR][1000 genomes]
rs17280818	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17281186	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17398081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891757	0.92[AFR][1000 genomes]
rs1936180	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55641015	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55659253	0.85[AMR][1000 genomes]
rs55764335	0.85[AMR][1000 genomes]
rs55891766	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs56003969	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56098960	0.85[AMR][1000 genomes]
rs56165011	0.85[AMR][1000 genomes]
rs56296645	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56384403	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57693980	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57748269	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57791058	0.85[AMR][1000 genomes]
rs57965355	0.85[AMR][1000 genomes]
rs58104924	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs58238888	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58258185	0.85[AMR][1000 genomes]
rs58288624	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59233561	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59475656	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959723	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs60252686	0.85[AMR][1000 genomes]
rs60311527	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61094745	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61208746	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61657599	0.90[EUR][1000 genomes]
rs61703239	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909960	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6916286	0.81[AMR][1000 genomes]
rs6923795	0.85[AMR][1000 genomes]
rs7742889	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748319	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7751451	0.85[AMR][1000 genomes]
rs7751884	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7755641	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7758798	0.85[AMR][1000 genomes]
rs7760656	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7765829	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7766599	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7772111	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7772373	0.90[EUR][1000 genomes]
rs7772482	0.90[EUR][1000 genomes]
rs7772682	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9688414	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9767359	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:28721800-28724000	Weak transcription	Placenta	Placenta
5	chr6:28723800-28724000	Flanking Active TSS	Hela-S3	cervix
6	chr6:28723800-28724000	Flanking Active TSS	K562	blood
7	chr6:28723800-28724200	Enhancers	A549	lung
8	chr6:28723800-28724400	Bivalent Enhancer	HepG2	liver

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