Variant report

Variant	rs1107160
Chromosome Location	chr6:28671422-28671423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28665079..28666654-chr6:28669944..28671678,2	K562	blood:
2	chr6:28664889..28672891-chr6:28674189..28678694,12	K562	blood:
3	chr6:28670960..28673190-chr6:28724668..28726201,2	K562	blood:
4	chr6:28671396..28673077-chr6:28683236..28684856,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10498733	0.83[ASN][1000 genomes]
rs17398081	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1891757	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936180	0.83[ASN][1000 genomes]
rs55641015	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56003969	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56296645	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56384403	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57170714	0.85[EUR][1000 genomes]
rs57693980	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57748269	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58104924	0.83[ASN][1000 genomes]
rs58238888	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58288624	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59233561	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59475656	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60311527	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61208746	0.94[ASN][1000 genomes]
rs61657599	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61703239	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901325	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6905871	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906105	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906506	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909960	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738101	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742889	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7748319	0.81[ASN][1000 genomes]
rs7751884	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754365	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755641	0.83[ASN][1000 genomes]
rs7772111	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772373	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772482	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772682	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9688414	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9767343	0.92[ASN][1000 genomes]
rs9767359	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28668600-28676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:28671000-28671600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28671200-28671800	Strong transcription	K562	blood

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