Variant report

Variant	rs1891757
Chromosome Location	chr6:28679620-28679621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28674230..28679862-chr6:28680075..28684685,7	K562	blood:
2	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:
3	chr6:28676549..28680840-chr6:28724202..28726516,6	K562	blood:
4	chr6:28677880..28679993-chr6:28950394..28952978,2	K562	blood:
5	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
6	chr6:28677491..28679930-chr6:28756497..28758578,2	K562	blood:
7	chr6:28676549..28680032-chr6:28724574..28727425,3	K562	blood:
8	chr6:28678329..28679999-chr6:28949047..28951282,2	K562	blood:

No data

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10498733	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1107160	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280797	0.97[AFR][1000 genomes]
rs17280818	0.97[AFR][1000 genomes]
rs17281186	0.97[AFR][1000 genomes]
rs1936180	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs55641015	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55891766	0.97[AFR][1000 genomes]
rs56003969	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56296645	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56384403	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57170714	0.92[AFR][1000 genomes]
rs57693980	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57748269	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs58104924	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58238888	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59233561	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs59475656	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs59959723	0.97[AFR][1000 genomes]
rs60311527	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61094745	0.97[AFR][1000 genomes]
rs61208746	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61657599	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61703239	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901325	0.94[ASN][1000 genomes]
rs6905871	0.85[ASN][1000 genomes]
rs6906105	0.87[ASN][1000 genomes]
rs6906506	0.94[ASN][1000 genomes]
rs6909960	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7738101	0.94[ASN][1000 genomes]
rs7742889	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7748319	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7751884	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7754365	0.94[ASN][1000 genomes]
rs7755641	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7760656	0.97[AFR][1000 genomes]
rs7765829	0.97[AFR][1000 genomes]
rs7766599	0.97[AFR][1000 genomes]
rs7772111	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7772373	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772482	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772682	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9688414	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9767343	0.92[ASN][1000 genomes]
rs9767359	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28677800-28680000	Weak transcription	HMEC	breast
2	chr6:28679000-28680000	Weak transcription	A549	lung
3	chr6:28679400-28680200	Enhancers	K562	blood
4	chr6:28679600-28680000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links