Variant report

Variant	rs6905871
Chromosome Location	chr6:28676013-28676014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
2	chr6:28674230..28679862-chr6:28680075..28684685,7	K562	blood:
3	chr6:28322286..28324307-chr6:28675838..28677858,2	K562	blood:
4	chr6:28664889..28672891-chr6:28674189..28678694,12	K562	blood:
5	chr6:28659445..28664236-chr6:28674743..28678587,5	K562	blood:
6	chr6:28675753..28677785-chr6:28861605..28864200,2	K562	blood:
7	chr6:28631525..28633126-chr6:28674832..28677325,2	K562	blood:
8	chr6:28673375..28676258-chr6:28747112..28749974,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1107160	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17398081	0.83[AMR][1000 genomes]
rs1891757	0.85[ASN][1000 genomes]
rs55641015	0.80[EUR][1000 genomes]
rs55659253	0.85[AMR][1000 genomes]
rs55764335	0.85[AMR][1000 genomes]
rs56098960	0.85[AMR][1000 genomes]
rs56165011	0.85[AMR][1000 genomes]
rs56296645	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56384403	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57693980	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57791058	0.85[AMR][1000 genomes]
rs57965355	0.85[AMR][1000 genomes]
rs58238888	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58258185	0.85[AMR][1000 genomes]
rs58288624	0.83[AMR][1000 genomes]
rs60252686	0.85[AMR][1000 genomes]
rs60311527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61208746	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61657599	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61703239	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6901325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6909960	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6916286	0.81[AMR][1000 genomes]
rs6923795	0.85[AMR][1000 genomes]
rs7738101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742889	0.80[EUR][1000 genomes]
rs7748319	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7751451	0.85[AMR][1000 genomes]
rs7751884	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7754365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7758798	0.85[AMR][1000 genomes]
rs7772111	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7772373	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772482	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772682	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9688414	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9767343	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9767359	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28668600-28676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:28674600-28676600	ZNF genes & repeats	K562	blood
3	chr6:28675400-28676400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28676000-28676600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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