Variant report
| Variant | rs58288624 |
|---|---|
| Chromosome Location | chr6:28727596-28727597 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:11)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:11 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28725563..28727836-chr6:28829378..28832246,2 | K562 | blood: | |
| 2 | chr6:28723896..28728359-chr6:28734827..28738855,4 | K562 | blood: | |
| 3 | chr6:28708828..28711796-chr6:28725533..28729587,4 | K562 | blood: | |
| 4 | chr6:28723977..28727923-chr6:28779903..28783132,3 | K562 | blood: | |
| 5 | chr6:28654726..28657643-chr6:28726674..28728730,2 | K562 | blood: | |
| 6 | chr6:28688164..28689744-chr6:28726401..28728148,2 | K562 | blood: | |
| 7 | chr6:28725484..28727930-chr6:28757614..28759136,2 | K562 | blood: | |
| 8 | chr6:28700497..28703412-chr6:28724677..28728589,3 | K562 | blood: | |
| 9 | chr6:28723896..28728359-chr6:28734827..28738855,6 | K562 | blood: | |
| 10 | chr6:28712043..28717130-chr6:28723838..28729658,8 | K562 | blood: | |
| 11 | chr6:28687184..28690282-chr6:28725684..28728661,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000225595 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10498733 | 0.80[ASN][1000 genomes] |
| rs1107160 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17398081 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1936180 | 0.80[ASN][1000 genomes] |
| rs55641015 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56003969 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56296645 | 0.90[EUR][1000 genomes] |
| rs57170714 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs57693980 | 0.90[EUR][1000 genomes] |
| rs57748269 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58104924 | 0.80[ASN][1000 genomes] |
| rs59233561 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59475656 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61657599 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61703239 | 0.90[EUR][1000 genomes] |
| rs6901325 | 0.83[AMR][1000 genomes] |
| rs6905871 | 0.83[AMR][1000 genomes] |
| rs6906105 | 0.83[AMR][1000 genomes] |
| rs6906506 | 0.83[AMR][1000 genomes] |
| rs7738101 | 0.83[AMR][1000 genomes] |
| rs7742889 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7748319 | 0.80[EUR][1000 genomes] |
| rs7754365 | 0.83[AMR][1000 genomes] |
| rs7755641 | 0.80[ASN][1000 genomes] |
| rs7772373 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7772482 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28727200-28731200 | Weak transcription | K562 | blood |
| 2 | chr6:28727200-28731400 | Weak transcription | A549 | lung |
