Variant report

Variant	rs57693980
Chromosome Location	chr6:28685902-28685903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28682762..28689665-chr6:28860684..28866524,9	K562	blood:
2	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
3	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10498733	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1107160	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280797	1.00[AFR][1000 genomes]
rs17280818	1.00[AFR][1000 genomes]
rs17281186	1.00[AFR][1000 genomes]
rs17346574	0.82[AFR][1000 genomes]
rs17398081	0.90[EUR][1000 genomes]
rs1891757	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936180	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3999045	0.84[AMR][1000 genomes]
rs55641015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55659253	0.90[AMR][1000 genomes]
rs55764335	0.90[AMR][1000 genomes]
rs55891766	1.00[AFR][1000 genomes]
rs56003969	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56098960	0.90[AMR][1000 genomes]
rs56165011	0.90[AMR][1000 genomes]
rs56296645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56384403	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57170714	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57748269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57791058	0.90[AMR][1000 genomes]
rs57965355	0.90[AMR][1000 genomes]
rs58104924	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58238888	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58258185	0.90[AMR][1000 genomes]
rs58288624	0.90[EUR][1000 genomes]
rs59233561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59475656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59959723	1.00[AFR][1000 genomes]
rs60252686	0.90[AMR][1000 genomes]
rs60311527	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61094745	1.00[AFR][1000 genomes]
rs61208746	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61657599	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61703239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901325	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6905871	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906105	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906506	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909960	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916286	0.86[AMR][1000 genomes]
rs6923795	0.90[AMR][1000 genomes]
rs7738101	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7748319	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7751451	0.90[AMR][1000 genomes]
rs7751884	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754365	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755641	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7758798	0.90[AMR][1000 genomes]
rs7760656	1.00[AFR][1000 genomes]
rs7765829	1.00[AFR][1000 genomes]
rs7766599	1.00[AFR][1000 genomes]
rs7772111	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772373	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772482	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772682	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9688414	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9767343	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9767359	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28685200-28686000	Weak transcription	K562	blood

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