Variant report

Variant	rs55891766
Chromosome Location	chr6:28704010-28704011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27774714..27777094-chr6:28701466..28704120,2	K562	blood:
2	chr6:28701813..28704465-chr6:28720205..28723280,3	K562	blood:
3	chr6:27869505..27871710-chr6:28702327..28704726,2	K562	blood:
4	chr6:28694465..28699409-chr6:28701823..28706376,12	K562	blood:
5	chr6:28702781..28705852-chr6:28730775..28732422,3	K562	blood:
6	chr6:28687230..28688788-chr6:28703405..28705827,2	K562	blood:
7	chr6:28703036..28704771-chr6:28709650..28711944,2	MCF-7	breast:
8	chr6:28701328..28705041-chr6:28730739..28732422,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000217862	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000196747	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10498733	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233582	1.00[ASN][1000 genomes]
rs169682	0.94[AMR][1000 genomes]
rs17280797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17280818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17281186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346574	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17398081	0.81[ASN][1000 genomes]
rs185982	0.94[AMR][1000 genomes]
rs1891757	0.97[AFR][1000 genomes]
rs1936180	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209190	0.94[AMR][1000 genomes]
rs209192	0.94[AMR][1000 genomes]
rs209193	0.94[AMR][1000 genomes]
rs2754761	0.94[AMR][1000 genomes]
rs2754762	0.94[AMR][1000 genomes]
rs2754765	0.82[AMR][1000 genomes]
rs2765222	0.94[AMR][1000 genomes]
rs2765223	0.94[AMR][1000 genomes]
rs398795	0.94[AMR][1000 genomes]
rs453020	0.82[AMR][1000 genomes]
rs55641015	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs55659253	0.80[AMR][1000 genomes]
rs55764335	0.80[AMR][1000 genomes]
rs56003969	0.92[AFR][1000 genomes]
rs56030816	0.83[AMR][1000 genomes]
rs56098960	0.80[AMR][1000 genomes]
rs56110474	0.82[AMR][1000 genomes]
rs56165011	0.80[AMR][1000 genomes]
rs56296645	1.00[AFR][1000 genomes]
rs56308612	0.94[AMR][1000 genomes]
rs56374518	0.94[AMR][1000 genomes]
rs56384403	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs57170714	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs57491524	0.88[AMR][1000 genomes]
rs57693980	1.00[AFR][1000 genomes]
rs57748269	0.92[AFR][1000 genomes]
rs57791058	0.80[AMR][1000 genomes]
rs57965355	0.80[AMR][1000 genomes]
rs58104924	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58238888	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs58258185	0.80[AMR][1000 genomes]
rs59233561	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs59475656	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs59959723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60252686	0.80[AMR][1000 genomes]
rs60311527	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61094745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61208746	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs61703239	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6909960	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6923795	0.80[AMR][1000 genomes]
rs6938988	0.88[AMR][1000 genomes]
rs6939948	0.82[AMR][1000 genomes]
rs7742889	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7748319	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7751451	0.80[AMR][1000 genomes]
rs7751884	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7755641	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7758798	0.80[AMR][1000 genomes]
rs7760656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772111	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7772682	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9688414	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9767359	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28702200-28705600	Active TSS	A549	lung
2	chr6:28703000-28705200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:28703800-28704200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:28703800-28705400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:28704000-28704200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr6:28704000-28704200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:28704000-28704200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:28704000-28704400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr6:28704000-28704400	Active TSS	HMEC	breast
10	chr6:28704000-28704400	Flanking Active TSS	K562	blood
11	chr6:28704000-28704400	Enhancers	NHEK	skin

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