Variant report

Variant	rs185982
Chromosome Location	chr6:28787152-28787153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10498733	0.81[AMR][1000 genomes]
rs169682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280797	0.94[AMR][1000 genomes]
rs17280818	0.94[AMR][1000 genomes]
rs17281186	0.94[AMR][1000 genomes]
rs17346574	0.94[AMR][1000 genomes]
rs17375288	0.86[AFR][1000 genomes]
rs1936180	0.81[AMR][1000 genomes]
rs209189	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs209190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209199	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2754762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2754765	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2765220	1.00[ASN][1000 genomes]
rs2765222	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765223	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3131344	1.00[ASN][1000 genomes]
rs3132372	1.00[ASN][1000 genomes]
rs398795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417919	1.00[ASN][1000 genomes]
rs453020	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55891766	0.94[AMR][1000 genomes]
rs56030816	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56110474	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56308612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56678427	0.92[AFR][1000 genomes]
rs57491524	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58104924	0.81[AMR][1000 genomes]
rs59959723	0.94[AMR][1000 genomes]
rs61094745	0.94[AMR][1000 genomes]
rs6938988	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6939948	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7755641	0.81[AMR][1000 genomes]
rs7760656	0.94[AMR][1000 genomes]
rs7765829	0.94[AMR][1000 genomes]
rs7766599	0.94[AMR][1000 genomes]
rs9257190	1.00[ASN][1000 genomes]
rs9257226	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28786000-28792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28786400-28791000	Weak transcription	A549	lung
3	chr6:28786400-28791200	Weak transcription	K562	blood

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