Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28800000..28803653-chr6:28805218..28808820,5	K562	blood:
2	chr6:28795106..28798170-chr6:28801173..28804341,4	K562	blood:
3	chr6:28796077..28799032-chr6:28801173..28802819,3	K562	blood:

Variant related genes	Relation type
ENSG00000225173	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12386522	0.92[EUR][1000 genomes]
rs169682	0.92[AFR][1000 genomes]
rs17375288	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs185982	0.92[AFR][1000 genomes]
rs209181	0.89[ASN][1000 genomes]
rs209189	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs209190	0.92[AFR][1000 genomes]
rs209192	0.92[AFR][1000 genomes]
rs209193	0.92[AFR][1000 genomes]
rs209199	0.89[AFR][1000 genomes]
rs2754763	1.00[EUR][1000 genomes]
rs2754765	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2765222	0.84[AFR][1000 genomes]
rs398795	0.92[AFR][1000 genomes]
rs41270616	0.92[EUR][1000 genomes]
rs453020	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55908628	0.85[EUR][1000 genomes]
rs56110474	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56271755	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56308612	0.92[AFR][1000 genomes]
rs57491524	0.87[AFR][1000 genomes]
rs9468439	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468440	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9468445	1.00[EUR][1000 genomes]
rs9468447	0.92[EUR][1000 genomes]
rs9468450	0.89[EUR][1000 genomes]
rs9468451	0.92[EUR][1000 genomes]
rs9468460	0.85[EUR][1000 genomes]
rs9500892	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9501162	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28800600-28801800	Weak transcription	K562	blood

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