Variant report

Variant	rs9468439
Chromosome Location	chr6:28861118-28861119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28861105..28864204-chr6:28976259..28979273,3	K562	blood:
2	chr6:28830882..28836292-chr6:28860588..28866545,10	MCF-7	breast:
3	chr6:28861105..28863398-chr6:28977409..28979121,2	K562	blood:
4	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
5	chr6:28858916..28861710-chr6:28875406..28878163,2	MCF-7	breast:
6	chr6:28859779..28861420-chr6:28890604..28892940,2	MCF-7	breast:
7	chr6:28859278..28869415-chr6:28906395..28912460,18	K562	blood:
8	chr6:28693274..28695982-chr6:28860211..28863205,2	K562	blood:
9	chr6:28858686..28861504-chr6:28861818..28863578,3	MCF-7	breast:
10	chr6:28823126..28835109-chr6:28859268..28867076,23	K562	blood:
11	chr6:28802724..28808694-chr6:28856997..28865691,21	K562	blood:
12	chr6:28853385..28858171-chr6:28860346..28864278,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233366	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000213916	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000204709	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12386522	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17375288	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209181	1.00[ASN][1000 genomes]
rs209189	0.89[EUR][1000 genomes]
rs2754763	0.92[EUR][1000 genomes]
rs2754765	0.92[EUR][1000 genomes]
rs41270616	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs453020	0.92[EUR][1000 genomes]
rs55908628	1.00[AMR][1000 genomes]
rs56066225	1.00[AMR][1000 genomes]
rs56110474	0.92[EUR][1000 genomes]
rs56271755	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56678427	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9461503	1.00[AMR][1000 genomes]
rs9468440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9468447	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9468450	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468451	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9500892	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501162	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28849400-28863000	Weak transcription	Right Atrium	heart
2	chr6:28853400-28863000	Weak transcription	Fetal Kidney	kidney
3	chr6:28859600-28861600	Weak transcription	HepG2	liver
4	chr6:28860600-28862800	Enhancers	K562	blood

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