Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12386522	0.85[EUR][1000 genomes]
rs169682	0.86[AFR][1000 genomes]
rs185982	0.86[AFR][1000 genomes]
rs209181	1.00[ASN][1000 genomes]
rs209189	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs209190	0.86[AFR][1000 genomes]
rs209192	0.86[AFR][1000 genomes]
rs209193	0.86[AFR][1000 genomes]
rs209199	0.83[AFR][1000 genomes]
rs2754763	0.92[EUR][1000 genomes]
rs2754765	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs398795	0.86[AFR][1000 genomes]
rs41270616	0.85[EUR][1000 genomes]
rs453020	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56110474	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56271755	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308612	0.86[AFR][1000 genomes]
rs56678427	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57491524	0.80[AFR][1000 genomes]
rs9468439	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468440	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468445	0.92[EUR][1000 genomes]
rs9468447	0.85[EUR][1000 genomes]
rs9468450	0.82[EUR][1000 genomes]
rs9468451	0.85[EUR][1000 genomes]
rs9500892	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501162	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212225800-212229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:212227200-212229400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:212227400-212228200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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