Variant report

Variant	rs2765222
Chromosome Location	chr6:28767076-28767077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28757752..28760408-chr6:28765977..28767794,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10498733	0.81[AMR][1000 genomes]
rs169682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280797	0.94[AMR][1000 genomes]
rs17280818	0.94[AMR][1000 genomes]
rs17281186	0.94[AMR][1000 genomes]
rs17346574	0.94[AMR][1000 genomes]
rs185982	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936180	0.81[AMR][1000 genomes]
rs209189	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs209190	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209199	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2754762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2754765	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2765220	1.00[ASN][1000 genomes]
rs2765223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3131344	1.00[ASN][1000 genomes]
rs3132372	1.00[ASN][1000 genomes]
rs398795	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3999045	0.82[AFR][1000 genomes]
rs417919	1.00[ASN][1000 genomes]
rs453020	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55659253	0.84[AFR][1000 genomes]
rs55764335	0.84[AFR][1000 genomes]
rs55891766	0.94[AMR][1000 genomes]
rs56030816	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56098960	0.84[AFR][1000 genomes]
rs56110474	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56165011	0.84[AFR][1000 genomes]
rs56308612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56678427	0.84[AFR][1000 genomes]
rs57491524	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57791058	0.84[AFR][1000 genomes]
rs57965355	0.84[AFR][1000 genomes]
rs58104924	0.81[AMR][1000 genomes]
rs58258185	0.84[AFR][1000 genomes]
rs59959723	0.94[AMR][1000 genomes]
rs60252686	0.84[AFR][1000 genomes]
rs61094745	0.94[AMR][1000 genomes]
rs6923795	0.84[AFR][1000 genomes]
rs6938988	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6939948	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7751451	0.84[AFR][1000 genomes]
rs7755641	0.81[AMR][1000 genomes]
rs7760656	0.94[AMR][1000 genomes]
rs7765829	0.94[AMR][1000 genomes]
rs7766599	0.94[AMR][1000 genomes]
rs9257190	1.00[ASN][1000 genomes]
rs9257226	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3372934	chr6:28765323-28768021	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3372440	chr6:28765398-28767946	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3405136	chr6:28766073-28767271	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood
3	chr6:28765000-28769600	Weak transcription	K562	blood
4	chr6:28765400-28768400	Weak transcription	HepG2	liver

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