Variant report

Variant	rs3999045
Chromosome Location	chr6:28746797-28746798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28745229..28748097-chr6:28908724..28910861,2	K562	blood:
2	chr6:28746343..28748629-chr6:28776362..28778668,2	K562	blood:
3	chr6:28709319..28711119-chr6:28746197..28748161,2	K562	blood:
4	chr6:28739105..28742072-chr6:28746732..28748309,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1233614	0.94[ASN][1000 genomes]
rs2754761	0.92[AFR][1000 genomes]
rs2754762	0.92[AFR][1000 genomes]
rs2754765	0.82[AFR][1000 genomes]
rs2765222	0.82[AFR][1000 genomes]
rs2765223	0.92[AFR][1000 genomes]
rs55641015	0.84[AMR][1000 genomes]
rs55659253	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55764335	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56003969	0.84[AMR][1000 genomes]
rs56030816	0.92[AFR][1000 genomes]
rs56098960	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56165011	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56296645	0.84[AMR][1000 genomes]
rs56374518	0.92[AFR][1000 genomes]
rs56384403	0.95[AMR][1000 genomes]
rs57693980	0.84[AMR][1000 genomes]
rs57748269	0.84[AMR][1000 genomes]
rs57791058	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57965355	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58238888	0.95[AMR][1000 genomes]
rs58258185	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59233561	0.84[AMR][1000 genomes]
rs59475656	0.84[AMR][1000 genomes]
rs60252686	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60311527	0.95[AMR][1000 genomes]
rs61208746	0.95[AMR][1000 genomes]
rs61703239	0.84[AMR][1000 genomes]
rs6909960	0.95[AMR][1000 genomes]
rs6916286	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6923795	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6938988	0.92[AFR][1000 genomes]
rs6939948	0.92[AFR][1000 genomes]
rs7742889	0.84[AMR][1000 genomes]
rs7748319	0.90[AMR][1000 genomes]
rs7751451	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751884	0.95[AMR][1000 genomes]
rs7758798	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772111	0.95[AMR][1000 genomes]
rs7772682	0.90[AMR][1000 genomes]
rs9257182	0.92[ASN][1000 genomes]
rs9688414	0.95[AMR][1000 genomes]
rs9767343	0.86[AMR][1000 genomes]
rs9767359	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28745400-28746800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
2	chr6:28745400-28746800	Enhancers	K562	blood
3	chr6:28745400-28747000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr6:28745400-28747200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr6:28745800-28746800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr6:28746000-28747000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:28746400-28746800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr6:28746600-28747000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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