Variant report

Variant	rs9767343
Chromosome Location	chr6:28683843-28683844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28665615..28667253-chr6:28683513..28685587,2	MCF-7	breast:
2	chr6:28683304..28685259-chr6:28712068..28714540,2	MCF-7	breast:
3	chr6:27859461..27860993-chr6:28683101..28684616,2	K562	blood:
4	chr6:28682762..28689665-chr6:28860684..28866524,9	K562	blood:
5	chr6:28671396..28673077-chr6:28683236..28684856,2	K562	blood:
6	chr6:27859461..27861211-chr6:28682566..28684601,2	K562	blood:
7	chr6:28674230..28679862-chr6:28680075..28684685,7	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1107160	0.92[ASN][1000 genomes]
rs1891757	0.92[ASN][1000 genomes]
rs3999045	0.86[AMR][1000 genomes]
rs55641015	0.82[AMR][1000 genomes]
rs55659253	0.91[AMR][1000 genomes]
rs55764335	0.91[AMR][1000 genomes]
rs56003969	0.82[AMR][1000 genomes]
rs56098960	0.91[AMR][1000 genomes]
rs56165011	0.91[AMR][1000 genomes]
rs56296645	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56384403	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57693980	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57748269	0.82[AMR][1000 genomes]
rs57791058	0.91[AMR][1000 genomes]
rs57965355	0.91[AMR][1000 genomes]
rs58238888	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58258185	0.91[AMR][1000 genomes]
rs59233561	0.82[AMR][1000 genomes]
rs59475656	0.82[AMR][1000 genomes]
rs60252686	0.91[AMR][1000 genomes]
rs60311527	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61208746	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61657599	0.92[ASN][1000 genomes]
rs61703239	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6901325	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6905871	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6906105	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906506	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6909960	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916286	0.86[AMR][1000 genomes]
rs6923795	0.91[AMR][1000 genomes]
rs7738101	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7742889	0.82[AMR][1000 genomes]
rs7748319	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7751451	0.91[AMR][1000 genomes]
rs7751884	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754365	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758798	0.91[AMR][1000 genomes]
rs7772111	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772373	0.88[ASN][1000 genomes]
rs7772482	0.92[ASN][1000 genomes]
rs7772682	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9688414	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9767359	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28680200-28684400	Weak transcription	K562	blood

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