Variant report

Variant	rs12336145
Chromosome Location	chr9:470715-470716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr9:470487-470860	GM12878	blood:	n/a	chr9:470550-470561 chr9:470707-470718
2	ZNF263	chr9:469910-470972	HEK293-T-REx	kidney:	n/a	chr9:470570-470579
3	MAX	chr9:469746-470976	A549	lung:	n/a	n/a
4	POLR2A	chr9:468277-471159	GM12878	blood:	n/a	n/a
5	MAX	chr9:469996-470849	K562	blood:	n/a	n/a
6	NFIC	chr9:470218-471071	ECC-1	luminal epithelium:	n/a	chr9:470724-470741
7	POLR2A	chr9:469575-470846	ECC-1	luminal epithelium:	n/a	n/a
8	MAX	chr9:470048-470735	HepG2	liver:	n/a	n/a
9	ELF1	chr9:469542-470724	MCF-7	breast:	n/a	chr9:469772-469781 chr9:470123-470132 chr9:470118-470130
10	MAZ	chr9:469760-470802	GM12878	blood:	n/a	n/a
11	POLR2A	chr9:469707-470723	MCF-7	breast:	n/a	n/a
12	E2F6	chr9:469815-470907	A549	lung:	n/a	chr9:470121-470131
13	NFYB	chr9:470327-470749	GM12878	blood:	n/a	n/a
14	POLR2A	chr9:469757-471156	HepG2	liver:	n/a	n/a
15	MAX	chr9:469644-471112	A549	lung:	n/a	n/a
16	TAF1	chr9:469853-470870	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr9:469654-471048	SK-N-MC	brain:	n/a	n/a
18	POLR2A	chr9:469644-470750	GM15510	blood:	n/a	n/a
19	POLR2A	chr9:469731-470892	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAX	chr9:469600-470956	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:469906-470961	Hela-S3	cervix:	n/a	n/a
22	MYC	chr9:469958-470756	K562	blood:	n/a	n/a
23	MAX	chr9:469954-470814	H1-hESC	embryonic stem cell:	n/a	n/a
24	SIN3A	chr9:469624-470798	H1-hESC	embryonic stem cell:	n/a	n/a
25	BCL3	chr9:470157-470838	A549	lung:	n/a	n/a
26	POLR2A	chr9:469160-471529	Raji	blood:	n/a	n/a
27	PML	chr9:469601-470888	GM12878	blood:	n/a	n/a
28	TCF12	chr9:469609-470842	A549	lung:	n/a	n/a
29	STAT5A	chr9:469509-471039	GM12878	blood:	n/a	chr9:469685-469708 chr9:470148-470160
30	CTCF	chr9:470640-470790	GM12878	blood:	n/a	n/a
31	POLR2A	chr9:469620-470821	MCF-7	breast:	n/a	n/a
32	MAX	chr9:469919-470972	H1-hESC	embryonic stem cell:	n/a	n/a
33	E2F6	chr9:470507-470737	K562	blood:	n/a	n/a
34	WRNIP1	chr9:469729-470753	GM12878	blood:	n/a	n/a
35	POLR2A	chr9:469729-470730	PBDE	blood:	n/a	n/a
36	MYC	chr9:470597-470734	MCF-7	breast:	n/a	n/a
37	POLR2A	chr9:468971-470881	GM18951	blood:	n/a	n/a
38	NFIC	chr9:470320-471123	ECC-1	luminal epithelium:	n/a	chr9:470724-470741
39	MYBL2	chr9:470180-470828	HepG2	liver:	n/a	n/a
40	MAX	chr9:469671-470743	GM12878	blood:	n/a	n/a
41	MAX	chr9:469739-470776	MCF-7	breast:	n/a	n/a
42	RUNX3	chr9:469847-470842	GM12878	blood:	n/a	n/a
43	CHD2	chr9:470203-470750	K562	blood:	n/a	n/a
44	MYC	chr9:469911-470755	K562	blood:	n/a	n/a
45	MAX	chr9:469866-471008	ECC-1	luminal epithelium:	n/a	n/a
46	MAX	chr9:469606-470813	HepG2	liver:	n/a	n/a
47	POLR2A	chr9:468962-470807	GM18505	blood:	n/a	n/a
48	POLR2A	chr9:469660-470830	GM18526	blood:	n/a	n/a
49	BACH1	chr9:470546-470746	H1-hESC	embryonic stem cell:	n/a	n/a
50	MAX	chr9:469818-471243	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:469030..473266-chr9:476113..479118,4	MCF-7	breast:
2	chr9:469326..471004-chr9:547085..549851,2	MCF-7	breast:
3	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:
4	chr10:74033442..74034170-chr9:469881..470831,2	NB4	blood:

Variant related genes	Relation type
ENSG00000227155	TF binding region
KANK1	TF binding region
ENSG00000226403	Chromatin interaction
ENSG00000235330	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000107104	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1007886	1.00[EUR][1000 genomes]
rs10118662	1.00[EUR][1000 genomes]
rs10119358	1.00[EUR][1000 genomes]
rs10119849	1.00[EUR][1000 genomes]
rs10120652	1.00[EUR][1000 genomes]
rs10120656	1.00[EUR][1000 genomes]
rs10120682	1.00[EUR][1000 genomes]
rs10124264	1.00[EUR][1000 genomes]
rs10124592	1.00[EUR][1000 genomes]
rs10125427	1.00[EUR][1000 genomes]
rs10491601	1.00[EUR][1000 genomes]
rs10974353	1.00[EUR][1000 genomes]
rs10974856	1.00[EUR][1000 genomes]
rs12339824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346203	1.00[EUR][1000 genomes]
rs12351491	1.00[EUR][1000 genomes]
rs16919428	1.00[EUR][1000 genomes]
rs16919558	1.00[EUR][1000 genomes]
rs16919987	1.00[EUR][1000 genomes]
rs16920060	1.00[EUR][1000 genomes]
rs16920514	1.00[EUR][1000 genomes]
rs16935976	1.00[EUR][1000 genomes]
rs2068736	1.00[EUR][1000 genomes]
rs2131778	1.00[EUR][1000 genomes]
rs57352040	1.00[EUR][1000 genomes]
rs58702657	1.00[EUR][1000 genomes]
rs59057540	1.00[EUR][1000 genomes]
rs59363005	1.00[EUR][1000 genomes]
rs60196038	1.00[EUR][1000 genomes]
rs60638356	1.00[EUR][1000 genomes]
rs61591244	1.00[EUR][1000 genomes]
rs6476809	1.00[EUR][1000 genomes]
rs7026359	1.00[EUR][1000 genomes]
rs7026360	1.00[EUR][1000 genomes]
rs7026381	1.00[EUR][1000 genomes]
rs7030137	1.00[EUR][1000 genomes]
rs7038982	1.00[EUR][1000 genomes]
rs72705656	1.00[EUR][1000 genomes]
rs73371010	1.00[EUR][1000 genomes]
rs73371044	1.00[EUR][1000 genomes]
rs73371075	1.00[EUR][1000 genomes]
rs73373075	1.00[EUR][1000 genomes]
rs73373081	1.00[EUR][1000 genomes]
rs73376916	1.00[EUR][1000 genomes]
rs73376918	1.00[EUR][1000 genomes]
rs73376921	1.00[EUR][1000 genomes]
rs73639346	1.00[EUR][1000 genomes]
rs7858168	1.00[EUR][1000 genomes]
rs7872247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1034457	chr9:209254-482833	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv1015681	chr9:209254-503325	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv539826	chr9:209254-503325	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv1031505	chr9:214166-472285	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv539842	chr9:214166-472285	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
25	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
26	nsv1034686	chr9:214366-486131	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
27	nsv539858	chr9:214366-486131	Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
31	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
33	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
36	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	nsv918092	chr9:229197-502446	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
38	nsv1027206	chr9:236075-499586	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
39	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
40	nsv471267	chr9:237988-500979	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
41	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
42	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
43	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
44	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
45	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv531561	chr9:313298-472145	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:468600-471000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:468800-470800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:468800-471000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:469000-471000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
5	chr9:469200-470800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:469200-470800	Active TSS	Aorta	Aorta
7	chr9:469200-470800	Active TSS	Brain Anterior Caudate	brain
8	chr9:469200-470800	Active TSS	HSMM	muscle
9	chr9:469200-471000	Flanking Active TSS	Fetal Muscle Trunk	muscle
10	chr9:469200-471400	Flanking Active TSS	Dnd41	blood
11	chr9:469400-470800	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr9:469400-470800	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr9:469400-470800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:469400-470800	Active TSS	Fetal Brain Female	brain
15	chr9:469400-470800	Active TSS	Right Atrium	heart
16	chr9:469400-471000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:469400-471200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr9:469600-470800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr9:469600-470800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:469600-470800	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr9:469600-471000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr9:469800-470800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:469800-470800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:469800-470800	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr9:469800-470800	Active TSS	Colon Smooth Muscle	Colon
26	chr9:469800-471000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:469800-471000	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr9:469800-471200	Active TSS	Rectal Smooth Muscle	rectum
29	chr9:470000-470800	Active TSS	HSMMtube	muscle
30	chr9:470000-471400	Active TSS	Fetal Kidney	kidney
31	chr9:470400-470800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:470400-470800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr9:470400-470800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:470400-470800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:470400-470800	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr9:470400-470800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:470400-470800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr9:470400-470800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:470400-470800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:470400-470800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:470400-470800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
42	chr9:470400-470800	Flanking Active TSS	HMEC	breast
43	chr9:470400-470800	Flanking Active TSS	NH-A	brain
44	chr9:470400-470800	Flanking Active TSS	NHDF-Ad	bronchial
45	chr9:470400-470800	Flanking Active TSS	NHLF	lung
46	chr9:470400-471000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:470400-471000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:470400-471000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:470400-471000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr9:470400-471000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links