Variant report

Variant	rs12336926
Chromosome Location	chr9:96912177-96912178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96829876..96832396-chr9:96910876..96912523,2	MCF-7	breast:
2	chr9:96911236..96913938-chr9:96926952..96928493,2	MCF-7	breast:
3	chr9:96911035..96912883-chr9:96918874..96920896,2	MCF-7	breast:
4	chr9:96909256..96912834-chr9:96914432..96917620,5	K562	blood:
5	chr9:96904365..96907195-chr9:96908218..96912337,3	MCF-7	breast:
6	chr9:96848883..96850819-chr9:96911987..96913565,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10512231	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993068	0.95[ASN][1000 genomes]
rs10993069	0.95[ASN][1000 genomes]
rs10993090	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993094	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11788788	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12337981	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12338333	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12338885	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12339587	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12341175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12347752	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13295163	0.95[ASN][1000 genomes]
rs13439971	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13440059	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1421135	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34582118	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34765284	0.92[ASN][1000 genomes]
rs36044301	0.95[ASN][1000 genomes]
rs55881323	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56006511	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62575976	0.95[ASN][1000 genomes]
rs62575977	0.95[ASN][1000 genomes]
rs62578777	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62578780	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62578801	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7037996	0.95[ASN][1000 genomes]
rs7041934	0.95[ASN][1000 genomes]
rs7864156	0.95[ASN][1000 genomes]
rs7868381	0.95[ASN][1000 genomes]
rs7871468	0.95[ASN][1000 genomes]
rs7873928	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96912800	Weak transcription	NH-A	brain
2	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
3	chr9:96904400-96912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:96904600-96913200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:96907200-96912200	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:96907400-96913200	Weak transcription	Lung	lung
7	chr9:96909400-96913000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:96910200-96913400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96910200-96914000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96910200-96914200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:96910400-96913600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:96910600-96912600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:96910600-96913400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:96910600-96913400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr9:96910600-96913600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:96910600-96913600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:96910600-96914000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:96910800-96913400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:96911600-96912400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:96911600-96912800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:96911600-96913000	Enhancers	Primary B cells from peripheral blood	blood
22	chr9:96911600-96914000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:96911800-96914600	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:96912000-96912200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:96912000-96912200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr9:96912000-96912600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:96912000-96912600	Enhancers	Primary B cells from cord blood	blood
28	chr9:96912000-96913000	Enhancers	HepG2	liver
29	chr9:96912000-96913200	Enhancers	Spleen	Spleen
30	chr9:96912000-96913400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:96912000-96913600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr9:96912000-96914400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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