Variant report

Variant	rs13439971
Chromosome Location	chr9:96913764-96913765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96912919..96916926-chr9:96917380..96923023,7	K562	blood:
2	chr9:96911236..96913938-chr9:96926952..96928493,2	MCF-7	breast:
3	chr9:96909142..96911762-chr9:96912280..96913850,2	K562	blood:
4	chr9:96906524..96908540-chr9:96912648..96916811,3	K562	blood:
5	chr9:96913449..96915470-chr9:96932041..96933932,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10114341	0.89[ASW][hapmap];0.89[CHD][hapmap];0.80[LWK][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs10118003	0.89[ASW][hapmap];0.89[CHD][hapmap];0.80[LWK][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs10512231	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993068	1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs10993069	0.95[ASN][1000 genomes]
rs10993090	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993094	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11788788	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12336926	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12337981	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12338333	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12338885	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12339587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12341048	0.83[AFR][1000 genomes]
rs12341175	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12347752	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13295163	0.95[ASN][1000 genomes]
rs13440059	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1421135	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34582118	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34765284	0.91[ASN][1000 genomes]
rs36044301	0.95[ASN][1000 genomes]
rs55881323	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56006511	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62575976	0.95[ASN][1000 genomes]
rs62575977	0.95[ASN][1000 genomes]
rs62578777	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62578780	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62578801	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7037996	0.95[ASN][1000 genomes]
rs7041934	0.95[ASN][1000 genomes]
rs7864156	0.95[ASN][1000 genomes]
rs7868381	0.95[ASN][1000 genomes]
rs7871468	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs7872931	1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap]
rs7873928	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
2	chr9:96910200-96914000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96910200-96914200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:96910600-96914000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:96911600-96914000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96911800-96914600	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:96912000-96914400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:96912200-96915600	Enhancers	Fetal Muscle Leg	muscle
9	chr9:96912400-96914400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:96912400-96915600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:96912600-96913800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:96912600-96914200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:96912600-96914200	Enhancers	HSMM	muscle
14	chr9:96912800-96913800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:96912800-96914000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:96912800-96914200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:96912800-96914200	Enhancers	HSMMtube	muscle
18	chr9:96912800-96914400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:96913000-96914000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:96913000-96914200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:96913000-96914400	Enhancers	NHDF-Ad	bronchial
22	chr9:96913000-96914800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:96913200-96913800	Enhancers	Osteobl	bone
24	chr9:96913200-96914000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:96913200-96914000	Enhancers	Fetal Stomach	stomach
26	chr9:96913200-96914200	Enhancers	Lung	lung
27	chr9:96913200-96914400	Enhancers	Adipose Nuclei	Adipose
28	chr9:96913200-96914400	Weak transcription	Spleen	Spleen
29	chr9:96913200-96914800	Weak transcription	Primary B cells from cord blood	blood
30	chr9:96913400-96916200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:96913400-96916400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:96913400-96918800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:96913600-96914000	Weak transcription	Fetal Kidney	kidney
34	chr9:96913600-96914000	Enhancers	Fetal Lung	lung
35	chr9:96913600-96914400	Enhancers	HepG2	liver
36	chr9:96913600-96916000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr9:96913600-96916000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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