Variant report

Variant	rs7871468
Chromosome Location	chr9:96904554-96904555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96896364..96898799-chr9:96902522..96904654,2	MCF-7	breast:
2	chr9:96899589..96905668-chr9:96926948..96930471,6	MCF-7	breast:
3	chr9:96873433..96875351-chr9:96903210..96905278,2	MCF-7	breast:
4	chr9:96904108..96906275-chr9:96917076..96919477,3	K562	blood:
5	chr9:96899950..96905236-chr9:96927673..96930558,7	K562	blood:
6	chr9:96900996..96905420-chr9:96905582..96911723,7	K562	blood:
7	chr9:96904165..96905717-chr9:96916765..96919408,2	K562	blood:
8	chr9:96904365..96907195-chr9:96908218..96912337,3	MCF-7	breast:
9	chr9:96899016..96906502-chr9:96926750..96931118,14	MCF-7	breast:
10	chr9:96901943..96905386-chr9:96905431..96909431,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10512231	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10761319	0.89[AFR][1000 genomes]
rs10993068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993069	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993070	0.91[AFR][1000 genomes]
rs10993090	0.81[ASN][1000 genomes]
rs10993094	0.81[ASN][1000 genomes]
rs11788788	0.96[ASN][1000 genomes]
rs12336926	0.95[ASN][1000 genomes]
rs12337981	0.96[ASN][1000 genomes]
rs12338333	0.96[ASN][1000 genomes]
rs12338885	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12339587	0.96[ASN][1000 genomes]
rs12341175	0.96[ASN][1000 genomes]
rs12347752	0.81[ASN][1000 genomes]
rs12551579	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12551589	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13295163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439971	0.95[ASN][1000 genomes]
rs13440059	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1421135	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs34582118	0.93[ASN][1000 genomes]
rs34765284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36044301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55881323	0.93[ASN][1000 genomes]
rs56006511	0.93[ASN][1000 genomes]
rs62575976	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62575977	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578777	0.96[ASN][1000 genomes]
rs62578780	0.93[ASN][1000 genomes]
rs62578801	0.81[ASN][1000 genomes]
rs7037996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041934	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868381	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872931	1.00[CHB][hapmap]
rs7873928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96900400-96907400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:96901200-96904600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:96901200-96904600	Enhancers	Fetal Muscle Leg	muscle
4	chr9:96901400-96905800	Enhancers	Fetal Muscle Trunk	muscle
5	chr9:96902000-96904600	Enhancers	Fetal Stomach	stomach
6	chr9:96902200-96904600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:96902200-96904600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:96902200-96904600	Enhancers	Lung	lung
9	chr9:96902200-96904800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:96902200-96905400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:96902400-96904600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:96902400-96904600	Enhancers	Aorta	Aorta
13	chr9:96902400-96904600	Enhancers	Psoas Muscle	Psoas
14	chr9:96902400-96904800	Enhancers	Left Ventricle	heart
15	chr9:96902400-96904800	Enhancers	Right Ventricle	heart
16	chr9:96902600-96904800	Enhancers	Spleen	Spleen
17	chr9:96902800-96904600	Enhancers	Adipose Nuclei	Adipose
18	chr9:96902800-96904800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:96902800-96904800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:96902800-96906400	Weak transcription	Pancreas	Pancrea
21	chr9:96903000-96912000	Weak transcription	HepG2	liver
22	chr9:96903200-96904600	Weak transcription	Placenta	Placenta
23	chr9:96903200-96904600	Enhancers	Right Atrium	heart
24	chr9:96903200-96906200	Weak transcription	Gastric	stomach
25	chr9:96903400-96906400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:96903600-96904600	Weak transcription	NHEK	skin
27	chr9:96903600-96906200	Weak transcription	Stomach Mucosa	stomach
28	chr9:96903800-96906400	Weak transcription	K562	blood
29	chr9:96903800-96909200	Weak transcription	Hela-S3	cervix
30	chr9:96903800-96910800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:96904000-96904600	Enhancers	Esophagus	oesophagus
32	chr9:96904000-96906600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:96904000-96912800	Weak transcription	NH-A	brain
34	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
35	chr9:96904200-96905200	Weak transcription	HSMMtube	muscle
36	chr9:96904400-96904800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:96904400-96904800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:96904400-96906400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:96904400-96907800	Weak transcription	Fetal Lung	lung
40	chr9:96904400-96909000	Weak transcription	Colon Smooth Muscle	Colon
41	chr9:96904400-96912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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