Variant report

Variant	rs1233731
Chromosome Location	chr20:15522501-15522502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1233715	0.83[CHB][hapmap]
rs1233720	0.82[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs1233722	0.81[JPT][hapmap]
rs1233723	0.87[CHB][hapmap]
rs1233724	0.87[CHB][hapmap]
rs1233728	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs1233729	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs1233730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233736	0.83[CHB][hapmap];0.82[MEX][hapmap]
rs1233738	0.88[CHD][hapmap]
rs1233777	0.87[CHB][hapmap]
rs1558738	0.82[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs6043347	0.82[CHB][hapmap]
rs6043356	1.00[CEU][hapmap]
rs6043359	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1057672	chr20:15512342-15527164	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15522400-15524800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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