Variant report
Variant | rs6043359 |
---|---|
Chromosome Location | chr20:15533327-15533328 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-KIF16B-4 | chr20:15533257-15533530 | ENSG00000225181.1 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1151921 | 0.90[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
rs1233722 | 0.96[CEU][hapmap];0.83[TSI][hapmap] |
rs1233723 | 0.83[CEU][hapmap] |
rs1233724 | 0.83[CEU][hapmap] |
rs1233727 | 0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs1233728 | 0.83[CEU][hapmap] |
rs1233729 | 0.87[CEU][hapmap] |
rs1233730 | 0.81[MEX][hapmap] |
rs1233731 | 0.81[MEX][hapmap] |
rs1233736 | 0.83[CEU][hapmap] |
rs1233738 | 0.94[JPT][hapmap] |
rs1233774 | 0.87[CEU][hapmap] |
rs1233780 | 0.92[CEU][hapmap] |
rs1547972 | 0.95[CEU][hapmap] |
rs1558738 | 0.92[CEU][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes] |
rs6043354 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6043356 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
rs6079871 | 0.80[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6110664 | 0.80[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |