Variant report

Variant	rs12337785
Chromosome Location	chr9:79175869-79175870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79166569..79168474-chr9:79175522..79177682,2	MCF-7	breast:
2	chr9:79172789..79176579-chr9:79178896..79182054,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10119518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10123325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10521473	1.00[EUR][1000 genomes]
rs11144991	1.00[EUR][1000 genomes]
rs11144993	1.00[EUR][1000 genomes]
rs12336287	1.00[EUR][1000 genomes]
rs12340696	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342460	1.00[EUR][1000 genomes]
rs12344065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345816	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12351220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346041	1.00[EUR][1000 genomes]
rs17062959	1.00[EUR][1000 genomes]
rs17062964	1.00[EUR][1000 genomes]
rs17062967	1.00[EUR][1000 genomes]
rs17081141	1.00[EUR][1000 genomes]
rs17081142	1.00[EUR][1000 genomes]
rs2015354	1.00[EUR][1000 genomes]
rs28470485	1.00[EUR][1000 genomes]
rs28576740	1.00[EUR][1000 genomes]
rs28587388	1.00[EUR][1000 genomes]
rs28635278	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55725331	1.00[EUR][1000 genomes]
rs55825540	1.00[EUR][1000 genomes]
rs56026497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56143215	1.00[EUR][1000 genomes]
rs56145880	1.00[EUR][1000 genomes]
rs56679509	1.00[EUR][1000 genomes]
rs57802610	1.00[EUR][1000 genomes]
rs60467484	1.00[EUR][1000 genomes]
rs6560530	1.00[EUR][1000 genomes]
rs7044442	1.00[EUR][1000 genomes]
rs73449878	1.00[EUR][1000 genomes]
rs73449890	1.00[EUR][1000 genomes]
rs73449896	1.00[EUR][1000 genomes]
rs73452104	1.00[EUR][1000 genomes]
rs73454158	1.00[EUR][1000 genomes]
rs73650254	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650286	1.00[EUR][1000 genomes]
rs73650287	1.00[EUR][1000 genomes]
rs73650987	1.00[EUR][1000 genomes]
rs73650989	1.00[EUR][1000 genomes]
rs73650990	1.00[EUR][1000 genomes]
rs73650991	1.00[EUR][1000 genomes]
rs73650992	1.00[EUR][1000 genomes]
rs73650994	1.00[EUR][1000 genomes]
rs73650996	1.00[EUR][1000 genomes]
rs73650997	1.00[EUR][1000 genomes]
rs73650998	1.00[EUR][1000 genomes]
rs73650999	1.00[EUR][1000 genomes]
rs73651000	1.00[EUR][1000 genomes]
rs73651001	1.00[EUR][1000 genomes]
rs7848842	1.00[EUR][1000 genomes]
rs7850310	1.00[EUR][1000 genomes]
rs7855826	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867080	1.00[EUR][1000 genomes]
rs7875591	1.00[EUR][1000 genomes]
rs867646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79171400-79179800	Enhancers	Osteobl	bone
2	chr9:79171600-79177800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:79171600-79178400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:79171800-79177400	Weak transcription	HSMMtube	muscle
5	chr9:79172000-79178400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:79172000-79179800	Enhancers	NHDF-Ad	bronchial
7	chr9:79172200-79179600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:79172400-79177800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:79172400-79178400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:79172600-79179400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:79172800-79177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:79173400-79179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:79173400-79179400	Enhancers	Primary B cells from peripheral blood	blood
14	chr9:79173600-79177000	Enhancers	Primary B cells from cord blood	blood
15	chr9:79174000-79176000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:79174000-79176200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:79174000-79176400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:79174000-79176600	Enhancers	Stomach Mucosa	stomach
19	chr9:79174200-79176800	Enhancers	NHLF	lung
20	chr9:79174200-79178200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:79174200-79178400	Enhancers	HMEC	breast
22	chr9:79174400-79178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:79174800-79176000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:79174800-79176000	Enhancers	HSMM	muscle
25	chr9:79174800-79176200	Enhancers	Fetal Intestine Large	intestine
26	chr9:79174800-79178400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:79175000-79176000	Enhancers	NH-A	brain
28	chr9:79175000-79178000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:79175400-79176000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:79175400-79176200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:79175600-79176000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:79175600-79176000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr9:79175600-79176000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr9:79175600-79176200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr9:79175600-79176200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:79175600-79176400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:79175600-79176600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr9:79175600-79176600	Enhancers	Brain Anterior Caudate	brain
39	chr9:79175600-79176800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr9:79175600-79176800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:79175600-79176800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr9:79175600-79177000	Enhancers	GM12878-XiMat	blood
43	chr9:79175600-79178400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:79175800-79176200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:79175800-79176200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:79175800-79177600	Weak transcription	Fetal Intestine Small	intestine
47	chr9:79175800-79177600	Weak transcription	Small Intestine	intestine

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