Variant report

Variant	rs73454158
Chromosome Location	chr9:79218779-79218780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79213559..79216279-chr9:79218215..79220270,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10119518	1.00[EUR][1000 genomes]
rs10121652	1.00[EUR][1000 genomes]
rs10123325	1.00[EUR][1000 genomes]
rs10521473	1.00[EUR][1000 genomes]
rs11144991	1.00[EUR][1000 genomes]
rs11144993	1.00[EUR][1000 genomes]
rs12336287	1.00[EUR][1000 genomes]
rs12337785	1.00[EUR][1000 genomes]
rs12340696	1.00[EUR][1000 genomes]
rs12342460	1.00[EUR][1000 genomes]
rs12345816	1.00[EUR][1000 genomes]
rs12351220	1.00[EUR][1000 genomes]
rs1346041	1.00[EUR][1000 genomes]
rs17062959	1.00[EUR][1000 genomes]
rs17062964	1.00[EUR][1000 genomes]
rs17062967	1.00[EUR][1000 genomes]
rs17081141	1.00[EUR][1000 genomes]
rs17081142	1.00[EUR][1000 genomes]
rs2015354	1.00[EUR][1000 genomes]
rs28470485	1.00[EUR][1000 genomes]
rs28576740	1.00[EUR][1000 genomes]
rs28587388	1.00[EUR][1000 genomes]
rs28635278	1.00[EUR][1000 genomes]
rs55725331	1.00[EUR][1000 genomes]
rs55825540	1.00[EUR][1000 genomes]
rs56026497	1.00[EUR][1000 genomes]
rs56143215	1.00[EUR][1000 genomes]
rs56145880	1.00[EUR][1000 genomes]
rs56679509	1.00[EUR][1000 genomes]
rs57802610	1.00[EUR][1000 genomes]
rs60467484	1.00[EUR][1000 genomes]
rs6560530	1.00[EUR][1000 genomes]
rs7044442	1.00[EUR][1000 genomes]
rs73449878	1.00[EUR][1000 genomes]
rs73449890	1.00[EUR][1000 genomes]
rs73449896	1.00[EUR][1000 genomes]
rs73452104	1.00[EUR][1000 genomes]
rs73650254	1.00[EUR][1000 genomes]
rs73650286	1.00[EUR][1000 genomes]
rs73650287	1.00[EUR][1000 genomes]
rs73650987	1.00[EUR][1000 genomes]
rs73650989	1.00[EUR][1000 genomes]
rs73650990	1.00[EUR][1000 genomes]
rs73650991	1.00[EUR][1000 genomes]
rs73650992	1.00[EUR][1000 genomes]
rs73650994	1.00[EUR][1000 genomes]
rs73650996	1.00[EUR][1000 genomes]
rs73650997	1.00[EUR][1000 genomes]
rs73650998	1.00[EUR][1000 genomes]
rs73650999	1.00[EUR][1000 genomes]
rs73651000	1.00[EUR][1000 genomes]
rs73651001	1.00[EUR][1000 genomes]
rs7848842	1.00[EUR][1000 genomes]
rs7850310	1.00[EUR][1000 genomes]
rs7855826	1.00[EUR][1000 genomes]
rs7867080	1.00[EUR][1000 genomes]
rs7868812	1.00[AMR][1000 genomes]
rs7875591	1.00[EUR][1000 genomes]
rs867646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79211000-79219800	Weak transcription	GM12878-XiMat	blood
2	chr9:79211000-79220000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:79211000-79229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:79211400-79225000	Weak transcription	Gastric	stomach
5	chr9:79211600-79220000	Weak transcription	Primary B cells from cord blood	blood
6	chr9:79215400-79224400	Weak transcription	Stomach Mucosa	stomach
7	chr9:79215400-79229400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:79215800-79221200	Weak transcription	Fetal Intestine Small	intestine
9	chr9:79216000-79222400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:79216000-79226600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:79217000-79219200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:79217200-79219200	Enhancers	Fetal Brain Male	brain
13	chr9:79217800-79219000	Enhancers	Brain Germinal Matrix	brain
14	chr9:79217800-79221000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr9:79218200-79218800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:79218200-79219000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:79218200-79219000	Enhancers	Osteobl	bone
18	chr9:79218200-79219200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:79218200-79221000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:79218400-79218800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:79218400-79218800	Enhancers	HMEC	breast
22	chr9:79218400-79219000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:79218400-79219000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:79218400-79219000	Enhancers	HSMMtube	muscle
25	chr9:79218400-79219200	Enhancers	HSMM	muscle
26	chr9:79218600-79219400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr9:79218600-79219400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:79218600-79219400	Enhancers	Fetal Brain Female	brain
29	chr9:79218600-79224600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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