Variant report

Variant	rs7848842
Chromosome Location	chr9:79107988-79107989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10114810	0.85[AMR][1000 genomes]
rs10117913	0.85[AMR][1000 genomes]
rs10119518	1.00[EUR][1000 genomes]
rs10121652	1.00[EUR][1000 genomes]
rs10123325	1.00[EUR][1000 genomes]
rs11144991	1.00[EUR][1000 genomes]
rs11144993	1.00[EUR][1000 genomes]
rs12337785	1.00[EUR][1000 genomes]
rs12340696	1.00[EUR][1000 genomes]
rs12342460	1.00[EUR][1000 genomes]
rs12345816	1.00[EUR][1000 genomes]
rs12351220	1.00[EUR][1000 genomes]
rs2015354	1.00[EUR][1000 genomes]
rs28576740	1.00[EUR][1000 genomes]
rs28587388	1.00[EUR][1000 genomes]
rs28635278	1.00[EUR][1000 genomes]
rs4531113	1.00[AMR][1000 genomes]
rs55725331	1.00[EUR][1000 genomes]
rs56026497	1.00[EUR][1000 genomes]
rs57802610	1.00[EUR][1000 genomes]
rs60467484	1.00[EUR][1000 genomes]
rs6560530	1.00[EUR][1000 genomes]
rs7026392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7030155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7044442	1.00[EUR][1000 genomes]
rs7047230	1.00[ASN][1000 genomes]
rs73449878	1.00[EUR][1000 genomes]
rs73449890	1.00[EUR][1000 genomes]
rs73449896	1.00[EUR][1000 genomes]
rs73452104	1.00[EUR][1000 genomes]
rs73454158	1.00[EUR][1000 genomes]
rs73650254	1.00[EUR][1000 genomes]
rs7855826	1.00[EUR][1000 genomes]
rs7867080	1.00[EUR][1000 genomes]
rs7875591	1.00[EUR][1000 genomes]
rs867646	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:79081800-79117200	Weak transcription	Gastric	stomach
4	chr9:79082600-79117600	Weak transcription	NHLF	lung
5	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
6	chr9:79089000-79116400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:79091200-79108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
9	chr9:79093600-79111400	Weak transcription	NHDF-Ad	bronchial
10	chr9:79093600-79117200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:79093800-79109000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:79093800-79116600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:79093800-79117000	Weak transcription	HMEC	breast
14	chr9:79093800-79118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:79094200-79120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:79097200-79117200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:79100800-79108000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:79101200-79116400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:79101600-79108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:79102200-79111400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:79103800-79117200	Weak transcription	Lung	lung
22	chr9:79103800-79117800	Weak transcription	Thymus	Thymus
23	chr9:79104200-79108800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:79104200-79110400	Weak transcription	HSMM	muscle
25	chr9:79104200-79117400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:79104400-79108200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:79104400-79109000	Weak transcription	Osteobl	bone
28	chr9:79104400-79117400	Weak transcription	Small Intestine	intestine
29	chr9:79104600-79117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:79105200-79108800	Weak transcription	Fetal Intestine Large	intestine
31	chr9:79105800-79108000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:79105800-79117200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:79106200-79108000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:79106200-79117200	Weak transcription	HUVEC	blood vessel
35	chr9:79106600-79109200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:79106600-79110000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr9:79106600-79115000	Weak transcription	Stomach Mucosa	stomach
38	chr9:79106800-79109600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr9:79106800-79109800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:79107000-79108400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:79107000-79109200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr9:79107000-79109800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:79107000-79116600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:79107400-79108200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:79107400-79108800	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr9:79107400-79109600	Strong transcription	Fetal Intestine Small	intestine
47	chr9:79107600-79108000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:79107600-79108000	Strong transcription	Primary B cells from cord blood	blood
49	chr9:79107600-79108400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:79107600-79109400	Enhancers	H1 Cell Line	embryonic stem cell

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